Browse Element(s) Details


Os.55243.1.S1_at

Description gb:AK107719.1
DB_XREF= gi:32992928
TID=Os.55243.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E07, full insert sequence.
FL= gb:AK107719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g398901/11submergence induced protein SI397, putative, expressed
LOC_Os05g343901/11S-locus glycoprotein family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g39860Os.37617.1.S1_at11/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39860OsAffx.17306.1.S1_x_at2/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39870OsAffx.23588.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_x_at2/111+22818763..22819164hypothetical protein
LOC_Os01g39880OsAffx.23588.1.S1_at7/111+22820074..22820374hypothetical protein
LOC_Os01g39890OsAffx.23589.1.S1_s_at11/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39890Os.55243.1.S1_at1/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39900NANA1+22825705..22827308retrotransposon protein, putative, unclassified, expressed
LOC_Os01g39910NANA1+22832142..22832405hypothetical protein
LOC_Os01g39920Os.45173.5.S1_x_at4/111+22839067..22839867retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39930NANA1+22840133..22844500retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55243.1.S1_at--412--7731Chr09:18358992..18359016 (25 bp)
GGTGGCAGCTGCTCGCGACGACCTC
NONE
Os.55243.1.S1_at--919--9172Chr09:18358833..18358857 (25 bp)
TGCCGCACTGCCACGTGGAGAGAGA
NONE
Os.55243.1.S1_at--699--7597Chr02:21920315..21920335 (21 bp)
GGGAAACAGGCGTGGGTCCCACATA
NONE
Os.55243.1.S1_at--740--8636Chr11:6103165..6103185 (21 bp)
TGGGTCCCACATATGGCTAGCCGGT
NONE
Os.55243.1.S1_at--291--8312Chr09:18358780..18358804 (25 bp)
GGCTAGCCGGTTTTGGCTGGCCAAC
NONE
Os.55243.1.S1_at--223--1334Chr05:20301756..20301879 (25 bp)
AGAGGCATTTAGCTAGTCTGTTGGA
LOC_Os05g34390
Os.55243.1.S1_at--770--8534Chr09:18358691..18358715 (25 bp)
TGGAGTAGATTTTTTGTGCAAGTTA
NONE
Os.55243.1.S1_at--276--3271Chr09:18358664..18358688 (25 bp)
CAAATTTTAACTTGGCGAGCCATTT
NONE
Os.55243.1.S1_at--494--102311Chr02:15168551..15168575 (25 bp)
TTTGGCTAGGCTCTTGGAGATGCTC
NONE
Os.55243.1.S1_at--713--8051Chr09:18358627..18358651 (25 bp)
GGAGATGCTCTAACTGTGATAATAA
NONE
Os.55243.1.S1_at--206--3891Chr09:18358614..18358638 (25 bp)
CTGTGATAATAAGGCCTCAAGTTTA
NONE
Target Sequence 
GGTGGCAGCTGCTCGCGACGACCTCGACGGCGGATCTAGAGGGGCCGGCAATGGAGCTCGGGGCGGAGCTCGGCGGTGGC
GGTGACGGTGGCCGGCCGCGGCGATGACGGGGCGGCGGTGCCCGACTGCGGCGACGACGGCGCCCTCGTCACATTTGCGT
GCCGCACTGCCACGTGGAGAGAGAGGGGGAAACAGGCGTGGGTCCCACATATGGCTAGCCGGTTTTGGCTGGCCAACTTT
GGCTAGTCTAGTGGGGAATTTAGCCAGCCGGATGGCTTGGAGAGGCATTTAGCTAGTCTGTTGGAGTAGATTTTTTGTGC
AAGTTAGCCAAATTTTAACTTGGCGAGCCATTTGGCTAGGCTCTTGGAGATGCTCTAACTGTGATAATAAGGCCTCAAGT
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis