Browse Element(s) Details


OsAffx.23589.1.S1_s_at

Description tigr:9629.m03802
TID=OsAffx.23589.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3989011/11submergence induced protein SI397, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g39860Os.37617.1.S1_at11/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39860OsAffx.17306.1.S1_x_at2/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39870OsAffx.23588.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_x_at2/111+22818763..22819164hypothetical protein
LOC_Os01g39880OsAffx.23588.1.S1_at7/111+22820074..22820374hypothetical protein
LOC_Os01g39890OsAffx.23589.1.S1_s_at11/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39890Os.55243.1.S1_at1/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39900NANA1+22825705..22827308retrotransposon protein, putative, unclassified, expressed
LOC_Os01g39910NANA1+22832142..22832405hypothetical protein
LOC_Os01g39920Os.45173.5.S1_x_at4/111+22839067..22839867retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39930NANA1+22840133..22844500retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23589.1.S1_s_at--966--4651Chr01:22821498..22821522 (25 bp)
GCGTCGCCGGAGAAGCGGGAGCTGA
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--468--4671Chr01:22821469..22821493 (25 bp)
GCGGTCGGAGGAGCTGAGAAGCCCC
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--371--5951Chr01:22821454..22821478 (25 bp)
GAGAAGCCCCGCGTCGATGTTCGCG
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--160--691Chr01:22821438..22821462 (25 bp)
ATGTTCGCGGGTGCAAGGGATAATC
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--331--7671Chr01:22821422..22821446 (25 bp)
GGGATAATCGCATGCATCAGCTGCA
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--772--9231Chr01:22821415..22821439 (25 bp)
TCGCATGCATCAGCTGCAGAGCAAT
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--1031--3551Chr01:22821408..22821432 (25 bp)
CATCAGCTGCAGAGCAATGCTTAAT
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--714--5951Chr01:22821397..22821421 (25 bp)
GAGCAATGCTTAATTAACCACTACT
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--972--10491Chr01:22821384..22821408 (25 bp)
TTAACCACTACTACTATTACTGAAG
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--960--2131Chr01:22821354..22821378 (25 bp)
ACAGATTAACAGAAACCTGCTGCAT
LOC_Os01g39890
OsAffx.23589.1.S1_s_at--112--9831Chr01:22821348..22821372 (25 bp)
TAACAGAAACCTGCTGCATATGCGA
LOC_Os01g39890
Target Sequence 
GCGTCGCCGGAGAAGCGGGAGCTGAGGCGGCGGTCGGAGGAGCTGAGAAGCCCCGCGTCGATGTTCGCGGGTGCAAGGGA
TAATCGCATGCATCAGCTGCAGAGCAATGCTTAATTAACCACTACTACTATTACTGAAGTATTTACAGATTAACAGAAAC
CTGCTGCATATGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23589.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis