Browse Element(s) Details


Os.38429.1.S1_at

Description gb:AY332467.1
DB_XREF= gi:33242898
GEN=HAP5
TID=Os.38429.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38429 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative hap5 protein (HAP5) mRNA, complete cds.
PROD=putative hap5 protein
FL= gb:AY332467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g398508/11Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g219401/11Will die slowly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g39860Os.37617.1.S1_at11/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39860OsAffx.17306.1.S1_x_at2/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39870OsAffx.23588.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_x_at2/111+22818763..22819164hypothetical protein
LOC_Os01g39880OsAffx.23588.1.S1_at7/111+22820074..22820374hypothetical protein
LOC_Os01g39890OsAffx.23589.1.S1_s_at11/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39890Os.55243.1.S1_at1/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39900NANA1+22825705..22827308retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0030126cellular_componentCOPI vesicle coat
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38429.1.S1_at--606--3151Chr01:22802042..22802066 (25 bp)
AATTGTTGCTATACCGGAGGGTGTA
LOC_Os01g39850
Os.38429.1.S1_at--340--3011Chr01:22801774..22801798 (25 bp)
AATGACGGTGTTTTGCGCACTGGGA
LOC_Os01g39850
Os.38429.1.S1_at--955--10691Chr01:22801762..22801786 (25 bp)
TTGCGCACTGGGATTGAGTTGCATG
LOC_Os01g39850
Os.38429.1.S1_at--1030--4951Chr01:22801742..22801766 (25 bp)
GCATGAAGACCCATTCCTTGGTGAC
LOC_Os01g39850
Os.38429.1.S1_at--362--1391Chr01:22801736..22801760 (25 bp)
AGACCCATTCCTTGGTGACGTGATG
LOC_Os01g39850
Os.38429.1.S1_at--542--7371Chr01:22801722..22801746 (25 bp)
GTGACGTGATGTTAGCAAACCCAAG
LOC_Os01g39850
Os.38429.1.S1_at--60--10451Chr01:22801711..22801735 (25 bp)
TTAGCAAACCCAAGTACAAGCAATG
LOC_Os01g39850
Os.38429.1.S1_at--398--3231Chr01:22801695..22801719 (25 bp)
CAAGCAATGCCAATAAGTAATTTAG
LOC_Os01g39850
Os.38429.1.S1_at--640--5271Chr01:12291073..12291130 (24 bp)
GAATGAGGTTGGTAACTTTTTCTTG
LOC_Os01g21940
Os.38429.1.S1_at--543--331NONE
ATAATGTTTGCAGCGGCGGACCTAT
NONE
Os.38429.1.S1_at--139--9171Chr01:22801579..22801603 (25 bp)
TGCCGGGTGTGCACCGGCATAAAAA
NONE
Target Sequence 
AATTGTTGCTATACCGGAGGGTGTAGATATTAGTGGCACCATGGATGTTGCTAGTGATGTTGCTGCTATAGTTATCAATG
GTCAAGAAGAACATGAGAGGGAAACAAATGTTGAGCATCATCAGCAAAATGAGATATATGAAAGCATTGATATAGGAATA
ATCAATGCAAGTGTTGCGGATGATAATAAATATAGTATTAGCTGGGATGAATTGGGAATGGCTGATGATTCATTGCTAGA
CAAATTTTTGGAGGAGTTTCAAGTAAGAAATGACGGTGTTTTGCGCACTGGGATTGAGTTGCATGAAGACCCATTCCTTG
GTGACGTGATGTTAGCAAACCCAAGTACAAGCAATGCCAATAAGTAATTTAGTTGGCAAGTTTTGTTTATATCTCTTTTG
TAAGAATGAGGTTGGTAACTTTTTCTTGTTGAATATAATGTTTGCAGCGGCGGACCTATGTGGGGTGCCGGGTGTGCACC
GGCATAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis