Browse Element(s) Details


Os.37617.1.S1_at

Description gb:AK102472.1
DB_XREF= gi:32987681
TID=Os.37617.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 1-aminocyclopropane-1-carboxylate oxidase (P0672C09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094H01, full insert sequence.
FL= gb:AK102472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3986011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g39860Os.37617.1.S1_at11/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39860OsAffx.17306.1.S1_x_at2/111+22816343..22817944oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g39870OsAffx.23588.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_at3/111+22818763..22819164hypothetical protein
LOC_Os01g39870Os.31623.1.S1_x_at2/111+22818763..22819164hypothetical protein
LOC_Os01g39880OsAffx.23588.1.S1_at7/111+22820074..22820374hypothetical protein
LOC_Os01g39890OsAffx.23589.1.S1_s_at11/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39890Os.55243.1.S1_at1/111+22821313..22824000submergence induced protein SI397, putative, expressed
LOC_Os01g39900NANA1+22825705..22827308retrotransposon protein, putative, unclassified, expressed
LOC_Os01g39910NANA1+22832142..22832405hypothetical protein
LOC_Os01g39920Os.45173.5.S1_x_at4/111+22839067..22839867retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39930NANA1+22840133..22844500retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009693biological_processethylene biosynthesis
GO:0009727biological_processdetection of ethylene stimulus
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37617.1.S1_at--459--4711Chr01:22817415..22817439 (25 bp)
GCGGCCGGCTGTTCGTCAACATCGG
LOC_Os01g39860
Os.37617.1.S1_at--321--4711Chr01:22817463..22817487 (25 bp)
GCGGCGCCTACAAGAGCGTCGTGCA
LOC_Os01g39860
Os.37617.1.S1_at--767--8371Chr01:22817609..22817633 (25 bp)
GGCGACTACCTGGACTACTACCAGG
LOC_Os01g39860
Os.37617.1.S1_at--424--2031Chr01:22817625..22817649 (25 bp)
ACTACCAGGGCACCAAGTTCGGCGA
LOC_Os01g39860
Os.37617.1.S1_at--1076--1151Chr01:22817640..22817664 (25 bp)
AGTTCGGCGACAAGACCGCTAGGTT
LOC_Os01g39860
Os.37617.1.S1_at--752--4171Chr01:22817655..22817679 (25 bp)
CCGCTAGGTTCCAGGCCGTCAAGAA
LOC_Os01g39860
Os.37617.1.S1_at--110--5411Chr01:22817677..22817701 (25 bp)
GAAGCTCTTCAGCTGATTAAGCACT
LOC_Os01g39860
Os.37617.1.S1_at--141--131Chr01:22817728..22817752 (25 bp)
ATTAAAATCGCGTGCGCTAATCGGG
LOC_Os01g39860
Os.37617.1.S1_at--805--3672Chr01:22817761..22817785 (25 bp)
CTTTGTATACTTGTTTGGTTTGAAT
LOC_Os01g39860
Os.37617.1.S1_at--140--8591Chr01:22817776..22817800 (25 bp)
TGGTTTGAATCAATCGTCGTGTAGT
LOC_Os01g39860
Os.37617.1.S1_at--155--511Chr01:22817788..22817812 (25 bp)
ATCGTCGTGTAGTACGCAGGGTTCC
LOC_Os01g39860
Target Sequence 
GCGGCCGGCTGTTCGTCAACATCGGCGACCAGGTGGAGGTGCTCAGCGGCGGCGCCTACAAGAGCGTCGTGCACCGCGTC
GCCGCCGGCGCCGAGGGCCGCCGCCTGTCCGTCGCCACGTTCTACAACCCCGGGCCCGACGCCGTGATCGCGCCGGCGAC
GGCGGCGGCGCCGTACCCCGGGCCGTACAGGTACGGCGACTACCTGGACTACTACCAGGGCACCAAGTTCGGCGACAAGA
CCGCTAGGTTCCAGGCCGTCAAGAAGCTCTTCAGCTGATTAAGCACTTGGGGATTATATTTTGTTGTGATGTGATTAAAA
TCGCGTGCGCTAATCGGGGTTTGTAACTTTGTATACTTGTTTGGTTTGAATCAATCGTCGTGTAGTACGCAGGGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis