Browse Element(s) Details


Os.45999.1.S1_at

Description gb:AK100352.1
DB_XREF= gi:32985561
TID=Os.45999.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083G13, full insert sequence.
FL= gb:AK100352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3977011/11Calcineurin B-like protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified
LOC_Os01g39750OsAffx.11394.1.S1_at11/111+22739325..22740053hypothetical protein
LOC_Os01g39750Os.50833.1.S2_at2/111+22739325..22740053hypothetical protein
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006499biological_processN-terminal protein myristoylation
GO:0019722biological_processcalcium-mediated signaling
GO:0030007biological_processpotassium ion homeostasis
GO:0042539biological_processhypotonic salinity response
GO:0005955cellular_componentcalcineurin complex
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45999.1.S1_at--1108--9911Chr01:22757033..22757057 (25 bp)
TACTGTTGCGCAGAGAAATCTCGTC
LOC_Os01g39770
Os.45999.1.S1_at--846--5531Chr01:22757047..22757071 (25 bp)
GAAATCTCGTCTGGAAACTACTGCT
LOC_Os01g39770
Os.45999.1.S1_at--1145--451Chr01:22757050..22757074 (25 bp)
ATCTCGTCTGGAAACTACTGCTAAA
LOC_Os01g39770
Os.45999.1.S1_at--603--4011Chr01:22757054..22757078 (25 bp)
CGTCTGGAAACTACTGCTAAATTGT
LOC_Os01g39770
Os.45999.1.S1_at--1142--8151Chr01:22757059..22757083 (25 bp)
GGAAACTACTGCTAAATTGTTTGAA
LOC_Os01g39770
Os.45999.1.S1_at--726--2411Chr01:22757084..22757108 (25 bp)
AAAAATACCAGTCAGGACTTCATTA
LOC_Os01g39770
Os.45999.1.S1_at--46--7111Chr01:22757094..22757118 (25 bp)
GTCAGGACTTCATTAAATTCCTCGT
LOC_Os01g39770
Os.45999.1.S1_at--798--5691Chr01:22757099..22757123 (25 bp)
GACTTCATTAAATTCCTCGTTATTT
LOC_Os01g39770
Os.45999.1.S1_at--688--9891Chr01:22757123..22757147 (25 bp)
TACTTTGTTATTTTTTTGTCCATCT
LOC_Os01g39770
Os.45999.1.S1_at--331--4331Chr01:22757142..22757166 (25 bp)
CCATCTTATACTACAGGGACATCAC
LOC_Os01g39770
Os.45999.1.S1_at--1062--9551Chr01:22757145..22757169 (25 bp)
TCTTATACTACAGGGACATCACGAC
LOC_Os01g39770
Target Sequence 
TACTGTTGCGCAGAGAAATCTCGTCTGGAAACTACTGCTAAATTGTTTGAAAAAAATACCAGTCAGGACTTCATTAAATT
CCTCGTTATTTACTTTGTTATTTTTTTGTCCATCTTATACTACAGGGACATCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis