Browse Element(s) Details


OsAffx.9088.1.S1_at

Description tigr:9629.m03780
TID=OsAffx.9088.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3967011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39710Os.52092.1.S1_at10/111+22723971..22724975expressed protein
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9088.1.S1_at--937--2431Chr01:22703268..22703292 (25 bp)
AAAATGCGCATTTCCGGTTACCTGG
LOC_Os01g39670
OsAffx.9088.1.S1_at--96--8531Chr01:22703290..22703314 (25 bp)
TGGACACCGGCATCAACACTTTGGT
LOC_Os01g39670
OsAffx.9088.1.S1_at--449--9791Chr01:22703436..22703460 (25 bp)
TAAGCTTCAAGACACTTATCCCCAG
LOC_Os01g39670
OsAffx.9088.1.S1_at--980--3371Chr01:22703458..22703482 (25 bp)
CAGCGTGAAGGTTTTGGGTCTCTCT
LOC_Os01g39670
OsAffx.9088.1.S1_at--1154--751Chr01:22703513..22703537 (25 bp)
ATGTCCATCAGCTTCCTTAGGTGTT
LOC_Os01g39670
OsAffx.9088.1.S1_at--589--6651Chr01:22703834..22703858 (25 bp)
GTTGATCCTGTTGAGTGTGTGACCT
LOC_Os01g39670
OsAffx.9088.1.S1_at--149--7471Chr01:22703850..22703874 (25 bp)
GTGTGACCTCTCATCTCAAGAAGTT
LOC_Os01g39670
OsAffx.9088.1.S1_at--920--6351Chr01:22703887..22703911 (25 bp)
GATGCCATGGTGTCCTGGAAACCTT
LOC_Os01g39670
OsAffx.9088.1.S1_at--449--2831Chr01:22704017..22704041 (25 bp)
AAGTTAGCACCTTTGACCTCTGCAA
LOC_Os01g39670
OsAffx.9088.1.S1_at--435--5171Chr01:22704038..22704062 (25 bp)
GCAAGTTGGGCTAGTCACATCTGTA
LOC_Os01g39670
OsAffx.9088.1.S1_at--147--6171Chr01:22704068..22704092 (25 bp)
GAGGTTGTCCAATCCAGTCAAGGAA
LOC_Os01g39670
Target Sequence 
AAAATGCGCATTTCCGGTTACCTGGACACCGGCATCAACACTTTGGTGATCAACGAAACCACAGTTAAGGTAAACACAAA
TATAAGCTTCAAGACACTTATCCCCAGCGTGAAGGTTTTGGGTCTCTCTGTTCATTTCGGAGTACGAAAGGAGGCTTTGA
TGTCCATCAGCTTCCTTAGGTGTTTTCCAGAGGTTGAGACACTACATATAACTAGCAAAACGGACAAGGCTTCAGAAGCC
GAACAATTCAGTTTCTGGGGAAAGGTTGATCCTGTTGAGTGTGTGACCTCTCATCTCAAGAAGTTAGTGTTCCATGGGAT
GCCATGGTGTCCTGGAAACCTTGAGTTTCTCAAATTCATCGTGGAAGGGGCATACTTGCTAGAGAAGGTGTTGATTGTTC
TTCCTAAAGGAACTTACACTAGCATGCATAGCGTTATCACCAAACTCAAGTTAGCACCTTTGACCTCTGCAAGTTGGGCT
AGTCACATCTGTAAAATGGAGGTTGTCCAATCCAGTCAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis