Browse Element(s) Details


Os.5655.1.S1_at

Description gb:AK101293.1
DB_XREF= gi:32986502
TID=Os.5655.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033G23, full insert sequence.
FL= gb:AK101293.1 gb:AK061895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3117011/11Inosine-uridine preferring nucleoside hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os03g31180Os.50285.2.S1_x_at2/113+17711795..17715500Diacylglycerol kinase 1, putative
LOC_Os03g31190NANA3+17716520..17716969retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5655.1.S1_at--157--9891Chr03:17701507..17701531 (25 bp)
TACTTGAGCAAGATCCTGGGTCTTT
LOC_Os03g31170
Os.5655.1.S1_at--116--10131Chr03:17701480..17701504 (25 bp)
TATGATTACCACAAGGACGCCTACT
LOC_Os03g31170
Os.5655.1.S1_at--59--6131Chr03:17701301..17701325 (25 bp)
GAGTGTATCTTCACGATCCAGCAAC
LOC_Os03g31170
Os.5655.1.S1_at--525--10231Chr03:17701273..17701297 (25 bp)
TATTGCTGCGGTAGATCCGTCACTG
LOC_Os03g31170
Os.5655.1.S1_at--937--6231Chr03:17701212..17701236 (25 bp)
GATGGCATCACAAAGGGTCTCACAG
LOC_Os03g31170
Os.5655.1.S1_at--288--7811Chr03:17701197..17701221 (25 bp)
GGTCTCACAGTTTTCGACACAACCA
LOC_Os03g31170
Os.5655.1.S1_at--892--9791Chr03:17700624..17700648 (25 bp)
TAACTGCGTGGACCGGTAAGCCAAC
LOC_Os03g31170
Os.5655.1.S1_at--646--2611Chr03:17700602..17700626 (25 bp)
AACCGTGAAGGTTGCTGTGACCGTT
LOC_Os03g31170
Os.5655.1.S1_at--215--6351Chr03:17700577..17700601 (25 bp)
GATGCTCCTGCCGTTGTGGAGATGA
LOC_Os03g31170
Os.5655.1.S1_at--556--1071Chr03:17700488..17700512 (25 bp)
AGGGAAAAACGCTGCCTTTGTCTTG
LOC_Os03g31170
Os.5655.1.S1_at--944--10711Chr03:17700403..17700427 (25 bp)
TTGCTTTACATGATTCGTCGTCGAG
LOC_Os03g31170
Target Sequence 
TACTTGAGCAAGATCCTGGGTCTTTATTATGATTACCACAAGGACGCCTACTTCATAAAAGGAGTGTATCTTCACGATCC
AGCAACACTTATTGCTGCGGTAGATCCGTCACTGATGACTTACACGGAAGGTGTAGTGAGGGTGCAGACTGATGGCATCA
CAAAGGGTCTCACAGTTTTCGACACAACCAAGAAAAGGTATGGGGAGATAACTGCGTGGACCGGTAAGCCAACCGTGAAG
GTTGCTGTGACCGTTGATGCTCCTGCCGTTGTGGAGATGATCATGCAGAGGCTTACGACGGATGATTAGCAGCAGCAGCA
GCAGCAGCAGCAAGCAAGCAGCCAAGGGAAAAACGCTGCCTTTGTCTTGTTGAACCTGTCGGATCTTATAAAGAATAGAC
AATGCTGTATATCCTAAATTCTGAAGAATTTGCTTTACATGATTCGTCGTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis