Browse Element(s) Details


Os.50285.2.S1_x_at

Description gb:AK059684.1
DB_XREF= gi:32969702
TID=Os.50285.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-032-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A02, full insert sequence.
FL= gb:AK059684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g311802/11Diacylglycerol kinase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os03g31180Os.50285.2.S1_x_at2/113+17711795..17715500Diacylglycerol kinase 1, putative
LOC_Os03g31190NANA3+17716520..17716969retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31210NANA3+17729241..17731146UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g31230Os.7405.1.S1_at11/113+17735318..17739005Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0009409biological_processresponse to cold
GO:0009611biological_processresponse to wounding
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50285.2.S1_x_at--365--1171Chr03:17715435..17715459 (25 bp)
AGTCACCTAATCACTGCATCTCAGA
LOC_Os03g31180
Os.50285.2.S1_x_at--578--2772Chr03:17715459..17715483 (25 bp)
AAGAGGGCCCTCCTCCAAGAAATGG
LOC_Os03g31180
Os.50285.2.S1_x_at--304--6211Chr03:17715488..17715512 (25 bp)
GAGGCTTTCATAAACCCACTCTTGA
NONE
Os.50285.2.S1_x_at--755--5491Chr03:17715511..17715535 (25 bp)
GAAAACGGTCGCGAAGGTACTCAAT
NONE
Os.50285.2.S1_x_at--715--2891Chr03:17715524..17715548 (25 bp)
AAGGTACTCAATCTGCGTTGCAAGT
NONE
Os.50285.2.S1_x_at--738--7211Chr03:17715573..17715597 (25 bp)
GTCGATACTTCAACACCAGTCTAGA
NONE
Os.50285.2.S1_x_at--1051--3331Chr03:17715653..17715677 (25 bp)
CACGTCTCTCTTCACCAAGTATATA
NONE
Os.50285.2.S1_x_at--1123--2491Chr03:17715709..17715733 (25 bp)
AACATGGGTTCATTGCACACGTTGC
NONE
Os.50285.2.S1_x_at--849--8211Chr03:17715748..17715772 (25 bp)
GGAATTTCACTGTATGCACCACCTC
NONE
Os.50285.2.S1_x_at--733--8811Chr03:17715845..17715869 (25 bp)
TGTTGTGCAAGTTTTCTGTCTACCT
NONE
Os.50285.2.S1_x_at--139--10611Chr03:17715883..17715907 (25 bp)
TTCTGTCTGGAAGCTCTCTGTCGAG
NONE
Target Sequence 
AGTCACCTAATCACTGCATCTCAGAAGAGGGCCCTCCTCCAAGAAATGGCTCTGAGGCTTTCATAAACCCACTCTTGAAA
ACGGTCGCGAAGGTACTCAATCTGCGTTGCAAGTGATCATGCAGTTCGAAGCTGAGTTGTCGATACTTCAACACCAGTCT
AGACAAGAATGTCCTAAAGCAAATTTCAGGCAGGGAGAGGCTCTGCCTGCCTGGTGTCCACGTCTCTCTTCACCAAGTAT
ATATCCACTTGTTTGTGGTGGATGGAACCTAGGAAACATGGGTTCATTGCACACGTTGCACATATTTTTGATTGGAATTT
CACTGTATGCACCACCTCAGGGTAACAGTTGGTAAGCTTTTTTTTTTTGAGCTGAACAGTTGGGAAATGGGTAATGTTGT
GTTGAACTGTTGTTGTGCAAGTTTTCTGTCTACCTTGTTGGTCGGTCTTTCTGTCTGGAAGCTCTCTGTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50285.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis