Browse Element(s) Details


Os.7630.1.S1_s_at

Description gb:AU101606
DB_XREF= gi:9865856
DB_XREF=AU101606
CLONE=R0424
TID=Os.7630.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7630 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3116011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os03g31180Os.50285.2.S1_x_at2/113+17711795..17715500Diacylglycerol kinase 1, putative
LOC_Os03g31190NANA3+17716520..17716969retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7630.1.S1_s_at--895--7172Chr03:17697415..17697439 (25 bp)
GTCGGCACGGAGTTCTCGAAGGCGA
LOC_Os03g31160
Os.7630.1.S1_s_at--888--1512Chr03:17697494..17697518 (25 bp)
AGCAGTGGCAAGCTCCTGTTTTTTC
LOC_Os03g31160
Os.7630.1.S1_s_at--607--10352Chr03:17697513..17697537 (25 bp)
TTTTTCTGGTCATCAGAGGGAGGAG
LOC_Os03g31160
Os.7630.1.S1_s_at--475--7052Chr03:17698620..17698644 (25 bp)
GTAACCTCTCATTTATTGCACGTTT
LOC_Os03g31160
Os.7630.1.S1_s_at--827--4292Chr03:17698624..17698648 (25 bp)
CCTCTCATTTATTGCACGTTTGGAT
LOC_Os03g31160
Os.7630.1.S1_s_at--38--5092Chr03:17698637..17698661 (25 bp)
GCACGTTTGGATGCAACATTTAGGT
LOC_Os03g31160
Os.7630.1.S1_s_at--437--5152Chr03:17698649..17698673 (25 bp)
GCAACATTTAGGTGGCAAGGAGATT
LOC_Os03g31160
Os.7630.1.S1_s_at--438--2912Chr03:17698665..17698689 (25 bp)
AAGGAGATTATACATTGGCGATAGC
LOC_Os03g31160
Os.7630.1.S1_s_at--1037--9872Chr03:17698675..17698699 (25 bp)
TACATTGGCGATAGCATGGAGCAAC
LOC_Os03g31160
Os.7630.1.S1_s_at--712--6492Chr03:17698684..17698708 (25 bp)
GATAGCATGGAGCAACAGGCAGAAA
LOC_Os03g31160
Os.7630.1.S1_s_at--158--5952Chr03:17698693..17698717 (25 bp)
GAGCAACAGGCAGAAATGCCATTCT
LOC_Os03g31160
Target Sequence 
GTCGGCACGGAGTTCTCGAAGGCGAGGAGTCGGTCTGNCGGCGCATGACTTGATTTTCGAGTGATGTGGGGGCTCCATGA
GCAGTGGCAAGCTCCTGTTTTTTCTGGTCATCAGAGGGAGGAGGAGTTGTCTCCATCGCCTAGCCGTTCTCTGGATGCAT
CAAGCTTGCCCTCATCGCATCACGCCATCGTCCACTGGTAACCTCTCATTTATTGCACGTTTGGATGCAACATTTAGGTG
GCAAGGAGATTATACATTGGCGATAGCATGGAGCAACAGGCAGAAATGCCATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7630.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis