Browse Element(s) Details


Os.12460.2.S1_x_at

Description gb:AU030022
DB_XREF= gi:3763270
DB_XREF=AU030022
CLONE=E50510_2Z
TID=Os.12460.2
CNT=121
FEA=mRNA
TIER=Stack
STK=13
UG=Os.12460 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein S19 gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3113410/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g310906/1140S ribosomal protein S19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os03g31180Os.50285.2.S1_x_at2/113+17711795..17715500Diacylglycerol kinase 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12460.2.S1_x_at--979--9271NONE
TCCGGCAAGATGGAGCTCCCTGAGT
NONE
Os.12460.2.S1_x_at--698--9312Chr03:17682905..17682929 (25 bp)
TCCCTGAGTGGGTTGACATCGTGAA
LOC_Os03g31134
Os.12460.2.S1_x_at--1116--5712Chr03:17682930..17682954 (25 bp)
GACTGCGAGGTTCAAGGAGCTCCCT
LOC_Os03g31134
Os.12460.2.S1_x_at--532--5732Chr03:17682967..17682988 (22 bp)
GACTGGTACTACACGAGGGCTGCCT
LOC_Os03g31134
Os.12460.2.S1_x_at--614--1072Chr03:17682982..17683151 (25 bp)
AGGGCTGCCTCGATTGCAAGGAAGA
LOC_Os03g31134
Os.12460.2.S1_x_at--877--3551Chr03:17683294..17683317 (24 bp)
CATCATTGATGTCGACCCGAAGGGT
LOC_Os03g31134
Os.12460.2.S1_x_at--1133--6052Chr03:17683455..17683479 (25 bp)
GAGTTGATGTTACCATCGCCTGAAC
LOC_Os03g31134
Os.12460.2.S1_x_at--428--8851Chr03:17683488..17683512 (25 bp)
TGATCCTCAACCCTTAATGCCTGTC
LOC_Os03g31134
Os.12460.2.S1_x_at--27--4551Chr03:17683566..17683590 (25 bp)
GCCCTATCTTTGTTGGCTCAGAGAA
LOC_Os03g31134
Os.12460.2.S1_x_at--520--7431Chr03:17683629..17683653 (25 bp)
GTGTTTTTTGTCTTTTGCTGAATGA
LOC_Os03g31134
Os.12460.2.S1_x_at--639--5472Chr03:17683652..17683676 (25 bp)
GAACTCCTAATGCACTGTCACTAGT
LOC_Os03g31134
Target Sequence 
TCCGGCAAGATGGAGCTCCCTGAGTGGGTTGACATCGTGAAGACTGCGAGGTTCAAGGAGCTCCCTCCTTATGATCCGGA
CTGGTACTACACGAGGGCTGCCTCGATTGCAAGGAAGATCTACCTGAGGCAGGGTATTGGTGTAGGTGGCTTCCAGAAGA
TCTATGGTGGCCGCCAGAGGAACGGCTCACGCCCCCCGCACTTCTGCAAGAGCAGCGGCGCTATCTCACGCAACATCCTT
CAGCAGCTGCAGAAGATGGGCATCATTGATGTCGACCCGAAGGGTGGAAGACTCATCACCTCCCAGGGAAGGCGTGATCT
GGACCAAGTGGCCGGAAGAGTTGATGTTACCATCGCCTGAACAGATCCATTGATCCTCAACCCTTAATGCCTGTCATGTT
TGGTGGTTGAGTTGGCTACAGTTTGTTTGCAGTTTTGAATTAGAACATGCCCTATCTTTGTTGGCTCAGAGAATTGGAAG
TTGGATGCATCTAGTTATGATATTGCAGTATGTGTTTTTTGTCTTTTGCTGAATGAACTCCTAATGCACTGTCACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12460.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis