Browse Element(s) Details


Os.23162.1.S1_a_at

Description gb:AK072885.1
DB_XREF= gi:32982908
TID=Os.23162.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149P08, full insert sequence.
FL= gb:AK073401.1 gb:AK072885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0566011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os03g311102/11AC transposase, putative, expressed
LOC_Os02g581702/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed
LOC_Os12g05670OsAffx.31599.1.S1_at11/1112+2601226..2601649hypothetical protein
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23162.1.S1_a_at--10--4311Chr12:2604972..2604996 (25 bp)
CCTAGTTCTGGAGCTTGCATTGTTT
LOC_Os12g05660
Os.23162.1.S1_a_at--983--6711Chr12:2604976..2605000 (25 bp)
GTTCTGGAGCTTGCATTGTTTCCCA
LOC_Os12g05660
Os.23162.1.S1_a_at--660--10633Chr12:2604995..2605019 (25 bp)
TTCCCAGCTCATATCAGTGTTTCCC
LOC_Os12g05660
Os.23162.1.S1_a_at--671--1573Chr12:2605000..2605024 (25 bp)
AGCTCATATCAGTGTTTCCCACACG
LOC_Os12g05660
Os.23162.1.S1_a_at--78--251Chr12:2605005..2605029 (25 bp)
ATATCAGTGTTTCCCACACGTGTCA
LOC_Os12g05660
Os.23162.1.S1_a_at--428--7431Chr12:2605011..2605035 (25 bp)
GTGTTTCCCACACGTGTCAGATTAC
LOC_Os12g05660
Os.23162.1.S1_a_at--77--4371Chr12:2605018..2605042 (25 bp)
CCACACGTGTCAGATTACTTCCAAA
LOC_Os12g05660
Os.23162.1.S1_a_at--358--6551Chr12:2605030..2605054 (25 bp)
GATTACTTCCAAAATTTGTTCCCAG
LOC_Os12g05660
Os.23162.1.S1_a_at--5--10271Chr12:2605044..2605068 (25 bp)
TTTGTTCCCAGTTTTGCTTACTTCT
LOC_Os12g05660
Os.23162.1.S1_a_at--642--1211Chr12:2605053..2605077 (25 bp)
AGTTTTGCTTACTTCTGCTCCTATC
LOC_Os12g05660
Os.23162.1.S1_a_at--7--3671Chr12:2605060..2605084 (25 bp)
CTTACTTCTGCTCCTATCTGAAGGT
LOC_Os12g05660
Target Sequence 
CCTAGTTCTGGAGCTTGCATTGTTTCCCAGCTCATATCAGTGTTTCCCACACGTGTCAGATTACTTCCAAAATTTGTTCC
CAGTTTTGCTTACTTCTGCTCCTATCTGAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23162.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis