Browse Element(s) Details


OsAffx.31599.1.S1_at

Description tigr:9640.m00484
TID=OsAffx.31599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed
LOC_Os12g05670OsAffx.31599.1.S1_at11/1112+2601226..2601649hypothetical protein
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31599.1.S1_at--419--391Chr12:2601595..2601619 (25 bp)
ATCAGGCAAGCAGGAGCGGACCTAA
LOC_Os12g05670
OsAffx.31599.1.S1_at--1105--3231Chr12:2601589..2601613 (25 bp)
CAAGCAGGAGCGGACCTAACACGGG
LOC_Os12g05670
OsAffx.31599.1.S1_at--789--4211Chr12:2601534..2601558 (25 bp)
CCGCACAAGGGAGGCCGAGCGTCTT
LOC_Os12g05670
OsAffx.31599.1.S1_at--741--2871Chr12:2601528..2601552 (25 bp)
AAGGGAGGCCGAGCGTCTTCTCGAC
LOC_Os12g05670
OsAffx.31599.1.S1_at--490--891Chr12:2601523..2601547 (25 bp)
AGGCCGAGCGTCTTCTCGACGGCAG
LOC_Os12g05670
OsAffx.31599.1.S1_at--1073--971Chr12:2601474..2601498 (25 bp)
AGGAGACGACGCCAACCTTCGTGGC
LOC_Os12g05670
OsAffx.31599.1.S1_at--671--7532Chr12:18867441..18867464 (24 bp)
GTGGCTCGCACTGCAGATCGGAGAC
NONE
OsAffx.31599.1.S1_at--468--6391Chr12:2601439..2601463 (25 bp)
GATCGGAGACGCAGAGAAACTTGTT
LOC_Os12g05670
OsAffx.31599.1.S1_at--11--5551Chr12:2601424..2601448 (25 bp)
GAAACTTGTTTCCTTCTTTCTGATG
LOC_Os12g05670
OsAffx.31599.1.S1_at--821--2031Chr12:2601421..2601445 (25 bp)
ACTTGTTTCCTTCTTTCTGATGGAA
LOC_Os12g05670
OsAffx.31599.1.S1_at--312--8071Chr12:2601270..2601409 (25 bp)
GGAGCAGAGTACTCCCAGAAGGGAA
LOC_Os12g05670
Target Sequence 
ATCAGGCAAGCAGGAGCGGACCTAACACGGGGAGTAGGGGATTCAGCGCGAGGAGGTGAGGCCGCACAAGGGAGGCCGAG
CGTCTTCTCGACGGCAGCCGCGCGCGAGGAGGAGAGGGAGGAGGAGACGACGCCAACCTTCGTGGCTCGCACTGCAGATC
GGAGACGCAGAGAAACTTGTTTCCTTCTTTCTGATGGAAACCAACAGAGGGGAGCAGAGTACTCCCAGAAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis