Browse Element(s) Details


Os.54058.1.S1_at

Description gb:AK101620.1
DB_XREF= gi:32986829
TID=Os.54058.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052J02, full insert sequence.
FL= gb:AK101620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0568010/11TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed
LOC_Os12g05670OsAffx.31599.1.S1_at11/1112+2601226..2601649hypothetical protein
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54058.1.S1_at--1125--5911Chr12:2606347..2606371 (25 bp)
GAGCTTCATGGGTTACATGGCCCTT
LOC_Os12g05680
Os.54058.1.S1_at--1138--5151Chr12:2606315..2606339 (25 bp)
GCAAGCTGTCCAACCTTGAAGGCTT
LOC_Os12g05680
Os.54058.1.S1_at--919--6191Chr12:2605833..2605857 (25 bp)
GAGGCAACAGACTCTTCATCAGATG
LOC_Os12g05680
Os.54058.1.S1_at--497--5211Chr12:2605804..2605828 (25 bp)
GAATTCTGACAATTAGGCAGGCAGC
LOC_Os12g05680
Os.54058.1.S1_at--1041--9391NONE
TCGTCCCCGAGAGATATTGGTGGCA
NONE
Os.54058.1.S1_at--313--10531Chr12:2605095..2605119 (25 bp)
TTCAGCTTTCTGATTTACAAGGACT
LOC_Os12g05680
Os.54058.1.S1_at--798--7051Chr12:2605011..2605035 (25 bp)
GTAATCTGACACGTGTGGGAAACAC
LOC_Os12g05680
Os.54058.1.S1_at--644--5533Chr03:17674486..17674510 (25 bp)
GAAACACTGATATGAGCTGGGAAAC
NONE
Os.54058.1.S1_at--754--5531Chr12:2604973..2604997 (25 bp)
GAAACAATGCAAGCTCCAGAACTAG
LOC_Os12g05680
Os.54058.1.S1_at--752--6533Chr03:17674550..17674573 (24 bp)
GATTTCTCAGAACCCAGATTGCATA
NONE
Os.54058.1.S1_at--774--1433Chr03:17674573..17674597 (25 bp)
AGAACTCACATGGTAATTTGCCTGA
NONE
Target Sequence 
GAGCTTCATGGGTTACATGGCCCTTGCCCTGGGCAAGCTGTCCAACCTTGAAGGCTTTGTCATACAGGCTGATAACTTGA
GGCAACAGACTCTTCATCAGATGCACAGAATTCTGACAATTAGGCAGGCAGCTCGATGTTTCTTGGCAATTGGCGAGTAC
CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAGATATTGGTGGCAGATGAAGGCAACTGTGG
AGAGCTAAGCATAGCAGCACAACCATCTGAAAGCCAATTTTCAGCTTTCTGATTTACAAGGACTTTGAAGACTAACCTTC
AGATAGGAGCAGAAGTAAGCAAAACTGGGAACAAATTTTGGAAGTAATCTGACACGTGTGGGAAACACTGATATGAGCTG
GGAAACAATGCAAGCTCCAGAACTAGGAAGATTTCTCAGAACCCAGATTGCATAGAACTCACATGGTAATTTGCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis