Browse Element(s) Details


OsAffx.31598.1.S1_at

Description tigr:9640.m00482
TID=OsAffx.31598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0564011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed
LOC_Os12g05670OsAffx.31599.1.S1_at11/1112+2601226..2601649hypothetical protein
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31598.1.S1_at--477--6791Chr12:2591631..2591655 (25 bp)
GTTTTGGGTGCATAGACAGGTCCTT
LOC_Os12g05640
OsAffx.31598.1.S1_at--156--2331Chr12:2591603..2591627 (25 bp)
AAAGATGTACCGTGTGAACTTGTTT
LOC_Os12g05640
OsAffx.31598.1.S1_at--1037--5451Chr12:2591588..2591612 (25 bp)
GAACTTGTTTGGTGGAAATCCCTGT
LOC_Os12g05640
OsAffx.31598.1.S1_at--975--5571Chr12:2591574..2591598 (25 bp)
GAAATCCCTGTAAGGACATCCCATA
LOC_Os12g05640
OsAffx.31598.1.S1_at--733--10791Chr12:2591527..2591551 (25 bp)
TTGTTCATTATCTAGCTCTGCTCAG
LOC_Os12g05640
OsAffx.31598.1.S1_at--408--1592Chr12:2591514..2591538 (25 bp)
AGCTCTGCTCAGTCAGCATATTTTT
LOC_Os12g05640
OsAffx.31598.1.S1_at--750--2291Chr12:2591434..2591458 (25 bp)
AAAGAAGTTGGGTGCTTTCCAGATA
LOC_Os12g05640
OsAffx.31598.1.S1_at--412--5591Chr12:2591281..2591305 (25 bp)
GAAATCTCTTGACTATGTCTCCCAT
LOC_Os12g05640
OsAffx.31598.1.S1_at--167--10111Chr12:2591268..2591292 (25 bp)
TATGTCTCCCATATACCTACTATCT
LOC_Os12g05640
OsAffx.31598.1.S1_at--154--5451Chr12:2591218..2591242 (25 bp)
GAACATTTGGGACCGAGATTTCGAA
LOC_Os12g05640
OsAffx.31598.1.S1_at--831--2471Chr12:2591122..2591146 (25 bp)
AACACTGACAATTTTGCCATAGGCA
LOC_Os12g05640
Target Sequence 
GTTTTGGGTGCATAGACAGGTCCTTAAGAAAGATGTACCGTGTGAACTTGTTTGGTGGAAATCCCTGTAAGGACATCCCA
TAAATGCATATTTCTTTGCAACAATTGTTCATTATCTAGCTCTGCTCAGTCAGCATATTTTTGTTTTTGTCTTCAATCAG
AGCAAGGAAGATGGAGCTTGGGGAACATTCTCTGAGAAAAGAAGTTGGGTGCTTTCCAGATAGATAGTTGATACAAACAT
TTCCTTCTATGTTGGATAAATTTTGTCAATTTTTTTCCTTATTCACATGTTCATGCTTCATGGAGATACAGATGTTCTCC
ACTGTTCTTCTCTTTTGATGAGGTGTAATAGAAATCTCTTGACTATGTCTCCCATATACCTACTATCTCAAAAAAAAAAA
GTTGAATGGTAGTGAACATTTGGGACCGAGATTTCGAAAATAGTATATAGGGTTCCTATTGGTAAAAGCCAACAATGATT
TTGTGAAATGAATAATGAATAATCCTTGTAACACTGACAATTTTGCCATAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis