Browse Element(s) Details


OsAffx.20241.1.S1_at

Description gb:NM_197055.1
DB_XREF= gi:37535469
TID=OsAffx.20241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative mutator protein (OSJNBa0012L23.50), mRNA.
PROD=putative mutator protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g057007/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20241.1.S1_at--843--6331Chr10:17926121..17926145 (25 bp)
GATGCTACCTATTGTGGTTCGTCAA
NONE
OsAffx.20241.1.S1_at--70--3012Chr12:2630783..2630807 (25 bp)
AATGACTAGAGAACTGGGCCACTTG
LOC_Os12g05700
OsAffx.20241.1.S1_at--262--5673Chr12:2630875..2630939 (25 bp)
GACATGCTGTCAATCTGGTAAACCA
LOC_Os12g05700
OsAffx.20241.1.S1_at--681--9431Chr10:17926259..17926283 (25 bp)
TCTGGTAAACCATACATGCACCTGT
NONE
OsAffx.20241.1.S1_at--790--5532Chr12:2630974..2630998 (25 bp)
GAAACCCTAACATGGCTGATTATTT
LOC_Os12g05700
OsAffx.20241.1.S1_at--923--10432Chr12:2630997..2631021 (25 bp)
TTAGATCCTTGCTATTCGGTAGAAA
LOC_Os12g05700
OsAffx.20241.1.S1_at--17--4752Chr12:2631039..2631063 (25 bp)
GCAGGAGTTATTTTACCACTTCCAG
LOC_Os12g05700
OsAffx.20241.1.S1_at--1130--1232Chr12:2631100..2631124 (25 bp)
AGTTGTTGCCACCTCTTACTAAGAG
LOC_Os12g05700
OsAffx.20241.1.S1_at--391--4231Chr10:17926520..17926544 (25 bp)
CCGAATAGTCGGGTGCCTTGATAAG
NONE
OsAffx.20241.1.S1_at--205--1312Chr12:2631216..2631240 (25 bp)
AGATGTCTTGCCATGGGCCATAGGT
LOC_Os12g05700
OsAffx.20241.1.S1_at--954--7511Chr10:17926601..17926625 (25 bp)
GGGCCATAGGTCGACGTCACCAAAA
NONE
Target Sequence 
GATGCTACCTATTGTGGTTCGTCAACTCAATGCAATGACTAGAGAACTGGGCCACTTGAAGGTAGTTCAAGGTGATAGAG
ACCAAGCTGAGGTGACTGAGATCACTGCTGAACATGAGATTATTAGACATGCTGTCAATCTGGTAAACCATACATGCACC
TGTAGAGAGTGGCAAGTTTCTGGTAAACCATGCCCACATGCTTTAGCTCTCATAATATCATATAGAAACCCTAACATGGC
TGATTATTTAGATCCTTGCTATTCGGTAGAAAGGTATAAGCTTGCATATGCAGGAGTTATTTTACCACTTCCAGATAAGT
CCCAATGGCCAAAAGTGAATATTGGTTTTAAGTTGTTGCCACCTCTTACTAAGAGGGAAGTTGGGAGGCAAAGGAAGAAC
CGAATAGTCGGGTGCCTTGATAAGGGCAAGGCTAGGAGCAAAGGCAAGTGGCAGGTTCAATGTAAGAGATGTCTTGCCAT
GGGCCATAGGTCGACGTCACCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis