Browse Element(s) Details


OsAffx.31601.1.S1_s_at

Description tigr:9640.m00495
TID=OsAffx.31601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dnaK-type molecular chaperone BiP-C - soybean (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0576011/11dnaK protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein
LOC_Os12g05810Os.12341.1.S1_at2/1112+2677299..2679522Syntaxin 81, putative

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31601.1.S1_s_at--1118--5951Chr12:2653183..2653207 (25 bp)
GAGAAGGTCATCTCCCTCGTGGACG
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--1042--8571Chr12:2653262..2653286 (25 bp)
TGGTTCTCGTCGGTGGAAGCACAAA
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--255--6591Chr12:2653287..2653311 (25 bp)
GATTCCGAGGATTCGAGAGCTCATC
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--11--6011Chr12:2653301..2653325 (25 bp)
GAGAGCTCATCAAGAACTACTTCGC
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--509--7471Chr12:2653415..2653439 (25 bp)
GTGGGCTTCTGAGCCATCCCATGGA
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--829--531Chr12:2653430..2653454 (25 bp)
ATCCCATGGAGGATGGCTACCATTG
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--1000--3711Chr12:2653446..2653470 (25 bp)
CTACCATTGCATGGGAGCCGGTGGT
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--791--7771Chr12:2653468..2653492 (25 bp)
GGTCGCCGTCAGATAGGGTCGCCAA
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--1069--1051Chr12:2653482..2653506 (25 bp)
AGGGTCGCCAATGGATCGCTGTTAC
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--476--7971Chr12:2653494..2653518 (25 bp)
GGATCGCTGTTACCATGAATTTTAG
LOC_Os12g05760
OsAffx.31601.1.S1_s_at--803--5711Chr12:2653535..2653559 (25 bp)
GACTCTCTTGTGTACAACTACTGTT
LOC_Os12g05760
Target Sequence 
GAGAAGGTCATCTCCCTCGTGGACGCGGCAATGGCGGAGGCCAGACGCGCGGTGGCGGGGTTCGACGTGATCGATGAGGT
GGTTCTCGTCGGTGGAAGCACAAAGATTCCGAGGATTCGAGAGCTCATCAAGAACTACTTCGCCGGGAAGGAGGCGACGG
TGAAGGCGACGGCGAGCATTGGCGGCGGGGCGGTGGTGGTGGTGGAGCCTGAGGAAGCTGTCGTCCATGGCGGTGGGCTT
CTGAGCCATCCCATGGAGGATGGCTACCATTGCATGGGAGCCGGTGGTCGCCGTCAGATAGGGTCGCCAATGGATCGCTG
TTACCATGAATTTTAGCTGAATTTGAAATTTAGACTCTCTTGTGTACAACTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31601.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis