Browse Element(s) Details


Os.7585.2.S1_at

Description gb:AK101335.1
DB_XREF= gi:32986544
TID=Os.7585.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034I10, full insert sequence.
FL= gb:AK101335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0578011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein
LOC_Os12g05810Os.12341.1.S1_at2/1112+2677299..2679522Syntaxin 81, putative
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed
LOC_Os12g05840Os.51532.1.S1_at11/1112+2687775..2688828Germin-like protein subfamily 1 member 8 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7585.2.S1_at--456--1731Chr12:2662475..2662499 (25 bp)
ACCTTGCCTGGCGTCTTCGTTTAGT
LOC_Os12g05780
Os.7585.2.S1_at--675--8371Chr12:2662466..2662490 (25 bp)
GGCGTCTTCGTTTAGTGCTGAAGCC
LOC_Os12g05780
Os.7585.2.S1_at--1061--9111Chr12:2662451..2662475 (25 bp)
TGCTGAAGCCGTAGATTTGCCATCT
LOC_Os12g05780
Os.7585.2.S1_at--561--7131Chr12:2662412..2662436 (25 bp)
GTCATAGCTATAGATTACAGTCAAT
LOC_Os12g05780
Os.7585.2.S1_at--773--3451Chr12:2662395..2662419 (25 bp)
CAGTCAATATACACTTGTCATCACA
LOC_Os12g05780
Os.7585.2.S1_at--258--8731Chr12:2662380..2662404 (25 bp)
TGTCATCACATTTTTCGTTCTCCTG
LOC_Os12g05780
Os.7585.2.S1_at--186--5991Chr12:2662339..2662363 (25 bp)
GAGACAGCAGAGATGTTCTACAGGG
LOC_Os12g05780
Os.7585.2.S1_at--731--1811Chr12:2662265..2662289 (25 bp)
ACGAATTTCTACATTTCCCTCTGGA
LOC_Os12g05780
Os.7585.2.S1_at--469--7971Chr12:2662243..2662267 (25 bp)
GGATCTGTACAGAGTAATATGTTAC
LOC_Os12g05780
Os.7585.2.S1_at--926--1511Chr12:2662211..2662235 (25 bp)
AGCAGTTAAGTTGCATTGCAGCATT
LOC_Os12g05780
Os.7585.2.S1_at--36--2831Chr12:2662204..2662228 (25 bp)
AAGTTGCATTGCAGCATTTTAGGCT
LOC_Os12g05780
Target Sequence 
ACCTTGCCTGGCGTCTTCGTTTAGTGCTGAAGCCGTAGATTTGCCATCTAGAAACTCAGCATTGTCATAGCTATAGATTA
CAGTCAATATACACTTGTCATCACATTTTTCGTTCTCCTGTACATTTCTTATGGGGGAGACAGCAGAGATGTTCTACAGG
GTTGCATGACAGTTGTCCCNAAATACAATATAGTAACTGTTTGTGATAACACGAATTTCTACATTTCCCTCTGGATCTGT
ACAGAGTAATATGTTACTATATGAAGCAGTTAAGTTGCATTGCAGCATTTTAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7585.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis