Browse Element(s) Details


OsAffx.31602.1.S1_at

Description tigr:9640.m00502
TID=OsAffx.31602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0582011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein
LOC_Os12g05810Os.12341.1.S1_at2/1112+2677299..2679522Syntaxin 81, putative
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed
LOC_Os12g05840Os.51532.1.S1_at11/1112+2687775..2688828Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.51532.1.S1_at5/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.7753.1.S1_at1/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05870Os.51532.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05870Os.7753.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05880Os.51532.1.S1_at2/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05880OsAffx.12263.1.S1_at1/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05890Os.51098.1.S1_at11/1112+2704808..2705751expressed protein
LOC_Os12g05890Os.51098.1.S1_x_at11/1112+2704808..2705751expressed protein
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31602.1.S1_at--824--5531Chr12:2682316..2682340 (25 bp)
GAAACAATCACCGAATCACGCGCTT
LOC_Os12g05820
OsAffx.31602.1.S1_at--1107--5231Chr12:2682328..2682352 (25 bp)
GAATCACGCGCTTCATTTTGGGAGA
LOC_Os12g05820
OsAffx.31602.1.S1_at--98--10832Chr12:2682345..2682369 (25 bp)
TTGGGAGATGAAACGATGCCGCCGC
LOC_Os12g05820
OsAffx.31602.1.S1_at--508--9952Chr12:2682370..2682394 (25 bp)
TACGCCGTGTCGAACTGTCGATCCA
LOC_Os12g05820
OsAffx.31602.1.S1_at--36--8711Chr12:2682385..2682409 (25 bp)
TGTCGATCCAACCACGTGCGCGATT
LOC_Os12g05820
OsAffx.31602.1.S1_at--991--9491Chr12:2682415..2682439 (25 bp)
TCTCCTCTCAGTTGGGCTGTCTCTA
LOC_Os12g05820
OsAffx.31602.1.S1_at--424--9651Chr12:2682422..2682446 (25 bp)
TCAGTTGGGCTGTCTCTAATAAATA
LOC_Os12g05820
OsAffx.31602.1.S1_at--705--2251Chr12:2682442..2682466 (25 bp)
AAATACACAGCGATGGGCCTTGTTT
LOC_Os12g05820
OsAffx.31602.1.S1_at--395--792Chr12:2682454..2682478 (25 bp)
ATGGGCCTTGTTTTGGGCCAGACGA
LOC_Os12g05820
OsAffx.31602.1.S1_at--218--7711Chr12:2682511..2682535 (25 bp)
GGGTGCCCATGTGGTGAATTTATAG
LOC_Os12g05820
OsAffx.31602.1.S1_at--522--3172Chr12:2682542..2682566 (25 bp)
CAAGGTATTTCAGAATTTGGGCCGG
LOC_Os12g05820
Target Sequence 
GAAACAATCACCGAATCACGCGCTTCATTTTGGGAGATGAAACGATGCCGCCGCTACGCCGTGTCGAACTGTCGATCCAA
CCACGTGCGCGATTCCTCCTCTCCTCTCAGTTGGGCTGTCTCTAATAAATACACAGCGATGGGCCTTGTTTTGGGCCAGA
CGAAGGAGGAGGGGGTTCCAGGTTTTGGGCTGAGGGGGTGCCCATGTGGTGAATTTATAGGGGTAACAAGGTATTTCAGA
ATTTGGGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis