Browse Element(s) Details


Os.7753.1.S1_at

Description gb:AF032974.1
DB_XREF= gi:2655290
GEN=GER4
TID=Os.7753.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7753 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 4 (GER4) mRNA, complete cds.
PROD=germin-like protein 4
FL= gb:AF032974.1 gb:AK061164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1817011/11Nectarin-1 precursor, putative, expressed
LOC_Os12g058701/11Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g058601/11Germin-like protein subfamily 1 member 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein
LOC_Os01g18150OsAffx.23285.1.S1_at11/111+10161180..10162283Protein kinase domain containing protein
LOC_Os01g18160OsAffx.10053.1.S1_at7/111+10163039..10163404hypothetical protein
LOC_Os01g18160OsAffx.10053.1.S1_x_at6/111+10163039..10163404hypothetical protein
LOC_Os01g18170Os.7753.1.S1_at11/111+10164723..10165775Nectarin-1 precursor, putative, expressed
LOC_Os01g18180NANA1+10171168..10174361transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18190NANA1+10177478..10179182transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18200Os.45976.1.S1_x_at1/111+10181956..10185120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18210Os.46041.1.S1_at10/111+10190421..10193450Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7753.1.S1_at--871--3991Chr01:10165278..10165302 (25 bp)
CGTGTCTATGGCGAGGATCGACTAC
LOC_Os01g18170
Os.7753.1.S1_at--1039--4651Chr01:10165186..10165210 (25 bp)
GCGTCCTCGAGGTGGGCTTCATCAC
LOC_Os01g18170
Os.7753.1.S1_at--87--2473Chr12:2695659..2695678 (20 bp)
AACAAGCTCTTCACCAAGACTGTCA
LOC_Os12g05870
Os.7753.1.S1_at--584--2431Chr01:10164848..10164872 (25 bp)
AAAACCATCTGATCTACTCATTTGA
LOC_Os01g18170
Os.7753.1.S1_at--292--3731Chr01:10164835..10164859 (25 bp)
CTACTCATTTGATTTGGTTACGGAA
LOC_Os01g18170
Os.7753.1.S1_at--791--10071Chr01:10164804..10164828 (25 bp)
TAGTGGATACTGTCTGTAGCGTGCA
LOC_Os01g18170
Os.7753.1.S1_at--351--5031Chr01:10164782..10164806 (25 bp)
GCAGTTGATTTCTTCCGTTTGTAAA
LOC_Os01g18170
Os.7753.1.S1_at--973--3631Chr01:10164771..10164795 (25 bp)
CTTCCGTTTGTAAATCTGTTTGCAT
LOC_Os01g18170
Os.7753.1.S1_at--995--9051Chr01:10164751..10164775 (25 bp)
TGCATTTGTTAATTTGCCTTGGAAA
LOC_Os01g18170
Os.7753.1.S1_at--741--10271Chr01:10164739..10164763 (25 bp)
TTTGCCTTGGAAATAAGACTTGTTC
LOC_Os01g18170
Os.7753.1.S1_at--823--1391Chr01:10164724..10164748 (25 bp)
AGACTTGTTCCGTTTTGTGTGGACT
LOC_Os01g18170
Target Sequence 
CGTGTCTATGGCGAGGATCGACTACGCGCCGGGGGGACAGAACCCGCCGCACACGCACCCGCGCGCCACCGAGATCATCT
TCGTCCTCGAGGGCGTCCTCGAGGTGGGCTTCATCACCACTGCCAACAAGCTCTTCACCAAGACTGTCACCGCCGGCGAG
GTCTTCGTCTTCCCGCGCGGCCTCGTCCACTTCCAGCAGAACCGCGGCCACGGCCCCGCCGCCGTCATCGCCGCCTTCAA
CAGCCAGCTCCAGGGCACCCAGGCCATCGCCGCCACGCTCTTCGCCGCCGCGCCGCCCGTGCCGTCCGACGTCCTCGCCA
AGGCCTTCCGCGTCGACGTCCCGCAGGTGGACGCCATCAAGGCCAAGTTCAAGTGATCGTAGCCGGCCNCCGTCGATCTC
CCATCATTTTNTGCATTTTNTTTCATCAACAAAACCATCTGATCTACTCATTTGATTTGGTTACGGAATAATTTTAGTGG
ATACTGTCTGTAGCGTGCAGTTGATTTCTTCCGTTTGTAAATCTGTTTGCATTTGTTAATTTGCCTTGGAAATAAGACTT
GTTCCGTTTTGTGTGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis