Browse Element(s) Details


Os.20420.1.S1_at

Description gb:AK107149.1
DB_XREF= gi:32992358
TID=Os.20420.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamoyl-CoA reductase (P0581F09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D12, full insert sequence.
FL= gb:AK107149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1812011/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein
LOC_Os01g18150OsAffx.23285.1.S1_at11/111+10161180..10162283Protein kinase domain containing protein
LOC_Os01g18160OsAffx.10053.1.S1_at7/111+10163039..10163404hypothetical protein
LOC_Os01g18160OsAffx.10053.1.S1_x_at6/111+10163039..10163404hypothetical protein
LOC_Os01g18170Os.7753.1.S1_at11/111+10164723..10165775Nectarin-1 precursor, putative, expressed
LOC_Os01g18180NANA1+10171168..10174361transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20420.1.S1_at--281--1191Chr01:10148484..10148569 (25 bp)
AGTACCCTATCACCTCCAGATGTAA
LOC_Os01g18120
Os.20420.1.S1_at--1013--9631Chr01:10148733..10148752 (20 bp)
TCACCTCCAGATGTAAGGACAACAG
LOC_Os01g18120
Os.20420.1.S1_at--912--2751Chr01:10148860..10148884 (25 bp)
AAGACAAGGGTCATCTACCTGCAGC
LOC_Os01g18120
Os.20420.1.S1_at--1034--7691Chr01:10148867..10148891 (25 bp)
GGGTCATCTACCTGCAGCAATCTCA
LOC_Os01g18120
Os.20420.1.S1_at--318--4512Chr01:10148893..10148917 (25 bp)
GCCGTTCAGCCCTGTGAATCATGAT
LOC_Os01g18120
Os.20420.1.S1_at--281--3391Chr01:10148899..10148923 (25 bp)
CAGCCCTGTGAATCATGATCAGCCC
LOC_Os01g18120
Os.20420.1.S1_at--535--6591Chr01:10148944..10148968 (25 bp)
GATTGCGAATCATGATCAGATATAA
LOC_Os01g18120
Os.20420.1.S1_at--1090--5231Chr01:10148985..10149009 (25 bp)
GAATAAACTGAATCTGCGTGTATGC
LOC_Os01g18120
Os.20420.1.S1_at--732--5251Chr01:10148994..10149018 (25 bp)
GAATCTGCGTGTATGCATTGTGAAA
LOC_Os01g18120
Os.20420.1.S1_at--1012--831Chr01:10149023..10149047 (25 bp)
ATGGAGTTGAATCCTAGTGAGTCAA
LOC_Os01g18120
Os.20420.1.S1_at--439--571Chr01:10149033..10149057 (25 bp)
ATCCTAGTGAGTCAATGATTATCGT
LOC_Os01g18120
Target Sequence 
AGTACCCTATCACCTCCAGATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACAAAGGCTGGAG
ACTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGTTTATACAGAACGGTAATAAGCTTACAAGACAAGGGTCATCTACC
TGCAGCAATCTCACGCCGTTCAGCCCTGTGAATCATGATCAGCCCNTGGGAAGATTTGAATAAATTGATTGCGAATCATG
ATCAGATATAAATTAAAGGGAAGATTTGAATAAACTGAATCTGCGTGTATGCATTGTGAAAAGGAATGGAGTTGAATCCT
AGTGAGTCAATGATTATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis