Browse Element(s) Details


Os.6716.1.S1_at

Description gb:AK071713.1
DB_XREF= gi:32981736
TID=Os.6716.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0581F09.11 (P0581F09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109L19, full insert sequence.
FL= gb:AK071713.1 gb:AK060908.1 gb:AK122051.1 gb:AK104205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g180709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18040Os.1709.1.S1_x_at5/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040Os.31497.2.S1_x_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040OsAffx.19614.1.A1_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18050Os.7126.1.S1_at11/111+10096074..10099799Tubulin beta-4 chain, putative, expressed
LOC_Os01g18060Os.24155.1.S1_at11/111+10110690..10115776expressed protein
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6716.1.S1_at--368--4771Chr01:10119691..10119715 (25 bp)
GCTGCTGGAGCCCTTGTAAGACAGA
LOC_Os01g18070
Os.6716.1.S1_at--328--7051Chr01:10119706..10119730 (25 bp)
GTAAGACAGAACACAAGGATCCCCT
LOC_Os01g18070
Os.6716.1.S1_at--86--2211Chr01:10119718..10119740 (23 bp)
ACAAGGATCCCCTGTGGAGAGGTAT
LOC_Os01g18070
Os.6716.1.S1_at--336--3671Chr01:10120344..10120368 (25 bp)
CTTTGCATCATCTTATATTGGACAG
LOC_Os01g18070
Os.6716.1.S1_at--247--10211Chr01:10120359..10120383 (25 bp)
TATTGGACAGTGCAGGATTGTTGAA
LOC_Os01g18070
Os.6716.1.S1_at--840--5311Chr01:10120381..10120405 (25 bp)
GAAGGTGACACTGTTCCATGAGTTC
LOC_Os01g18070
Os.6716.1.S1_at--1071--6671Chr01:10120393..10120417 (25 bp)
GTTCCATGAGTTCGGCGGTTTATGT
LOC_Os01g18070
Os.6716.1.S1_at--335--10112Chr01:10120413..10120437 (25 bp)
TATGTTTACTTTCCTCCCCAATAAT
LOC_Os01g18070
Os.6716.1.S1_at--928--6811Chr01:10120495..10120519 (25 bp)
GTTTAAGATGCGCTCCATGGAACAA
LOC_Os01g18070
Os.6716.1.S1_at--805--5491Chr01:10120514..10120576 (25 bp)
GAACAAAGAGAACCATTACGGCACA
NONE
Os.6716.1.S1_at--818--131NONE
ATTACGGCACAAAAATCTAGCATCG
NONE
Target Sequence 
GCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAG
GAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTG
AGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGAT
TCAATGATTGGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCCTCGAGTTCTGCCCAATAAACCTTGTTTCTGTTTTT
GCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGC
GGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGCANAAAGCTGGCCATGTANNNNTTCGTTNTCTG
TATTCCATATGTTTAAGATGCGCTCCATGGAACAAAGAGAACCATTACGGCACAAAAATCTAGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis