Browse Element(s) Details


Os.6716.2.S1_x_at

Description gb:NM_187710.1
DB_XREF= gi:34902505
GEN=P0581F09.11
TID=Os.6716.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0581F09.11 (P0581F09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0581F09.11 (P0581F09.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1807010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18040Os.1709.1.S1_x_at5/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040Os.31497.2.S1_x_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040OsAffx.19614.1.A1_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18050Os.7126.1.S1_at11/111+10096074..10099799Tubulin beta-4 chain, putative, expressed
LOC_Os01g18060Os.24155.1.S1_at11/111+10110690..10115776expressed protein
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6716.2.S1_x_at--474--3211Chr01:10118157..10118181 (25 bp)
CAAGTGCATCTCTCATTGGTGATAT
LOC_Os01g18070
Os.6716.2.S1_x_at--457--3251Chr01:10119246..10119270 (25 bp)
CAACGTTCAAATTGGATCTGGGACC
LOC_Os01g18070
Os.6716.2.S1_x_at--1087--2231Chr01:10119281..10119305 (25 bp)
ACAATTCTCTTGTCCATGTGGCAAA
LOC_Os01g18070
Os.6716.2.S1_x_at--930--2431Chr01:10119321..10119345 (25 bp)
AAAAGTCTTTCCAACCATCATTGGG
LOC_Os01g18070
Os.6716.2.S1_x_at--292--6251NONE
GATGGTTGCTGCTGGAGCCCTTTTA
NONE
Os.6716.2.S1_x_at--133--8071Chr01:10119697..10120057 (25 bp)
GGAGCCCTTTTATATTGGATTCAGG
LOC_Os01g18070
Os.6716.2.S1_x_at--71--5551Chr01:10120067..10120091 (25 bp)
GAAACCCTGCCAAATTCCTGAGGAA
LOC_Os01g18070
Os.6716.2.S1_x_at--883--3071Chr01:10120124..10120148 (25 bp)
AATCAGCTTCTAACTATTCCACTCT
LOC_Os01g18070
Os.6716.2.S1_x_at--739--891Chr01:10120154..10120178 (25 bp)
AGGCCCATGCTGCTGAGAATGCCAA
LOC_Os01g18070
Os.6716.2.S1_x_at--426--1611Chr01:10120205..10120229 (25 bp)
AGCTGTTCCGCAAGAAGTCTGCTCA
LOC_Os01g18070
Os.6716.2.S1_x_at--892--711Chr01:10120252..10120276 (25 bp)
ATGATTGGTGCTACTCGGGAGGTTA
LOC_Os01g18070
Target Sequence 
CAAGTGCATCTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTATGGATGCGTCTTAAGAGGGGATGCA
AACAACGTTCAAATTGGATCTGGGACCAATATACAAGACAATTCTCTTGTCCATGTGGCAAAATCTAATCTTAGTGGAAA
AGTCTTTCCAACCATCATTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTGAGGACGAAG
CATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTTTA
TATTGGATTCAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGA
ATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGA
AGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGATTCAATGATTGGTGCTACTCGGGAGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6716.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis