Browse Element(s) Details


Os.6672.1.S1_at

Description gb:AK068117.1
DB_XREF= gi:32978135
TID=Os.6672.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.6672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134A06, full insert sequence.
FL= gb:AK104498.1 gb:AK068117.1 gb:AK104803.1 gb:AK106177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1808011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18060Os.24155.1.S1_at11/111+10110690..10115776expressed protein
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6672.1.S1_at--227--1831Chr01:10131769..10131793 (25 bp)
ACGCCTCCTGGCCAACAAATTAATG
LOC_Os01g18080
Os.6672.1.S1_at--982--5131Chr01:10131793..10131817 (25 bp)
GCAAAGATATCATCACAGCCGGATT
LOC_Os01g18080
Os.6672.1.S1_at--680--3371Chr01:10131808..10131832 (25 bp)
CAGCCGGATTCTATTGGTGGAGCCA
LOC_Os01g18080
Os.6672.1.S1_at--31--5871Chr01:10131827..10131851 (25 bp)
GAGCCAGAACTTTATATCCATACGG
LOC_Os01g18080
Os.6672.1.S1_at--151--7451Chr01:10131851..10131875 (25 bp)
GTGTAATATACAATCTCATGCCATT
LOC_Os01g18080
Os.6672.1.S1_at--699--3531Chr01:10131867..10131891 (25 bp)
CATGCCATTGTTTAGCCTATTCTTC
LOC_Os01g18080
Os.6672.1.S1_at--381--1691Chr01:10131880..10131904 (25 bp)
AGCCTATTCTTCTATATGTTTTGAT
LOC_Os01g18080
Os.6672.1.S1_at--9--2691Chr01:10131932..10131956 (25 bp)
AAGCGTGCTGAGTTACCATTTTTAG
LOC_Os01g18080
Os.6672.1.S1_at--554--3591Chr01:10131973..10131997 (25 bp)
CATTGCCATGTTGATAGGTTTGCTA
LOC_Os01g18080
Os.6672.1.S1_at--44--7871Chr01:10132027..10132051 (25 bp)
GGTTTGCTATGTACTGCACTGGCTT
LOC_Os01g18080
Os.6672.1.S1_at--821--5091Chr01:10132042..10132066 (25 bp)
GCACTGGCTTGTACCCTGATATTTT
LOC_Os01g18080
Target Sequence 
ACGCCTCCTGGCCAACAAATTAATGCAAAGATATCATCACAGCCGGATTCTATTGGTGGAGCCAGAACTTTATATCCATA
CGGTGTAATATACAATCTCATGCCATTGTTTAGCCTATTCTTCTATATGTTTTGATAGTAAGGAGAGGCTTATTGTTGTA
AATAAGCGTGCTGAGTTACCATTTTTAGATTGCATGTATATACACATTGCCATGTTGATAGGTTTGCTATGTTATCTTTT
TTTTTTGTTTGAGATGGAGGTTTGCTATGTACTGCACTGGCTTGTACCCTGATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis