Browse Element(s) Details


Os.55297.1.S1_at

Description gb:AK107821.1
DB_XREF= gi:32993030
TID=Os.55297.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G01, full insert sequence.
FL= gb:AK107821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1810011/11rhomboid family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18060Os.24155.1.S1_at11/111+10110690..10115776expressed protein
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein
LOC_Os01g18150OsAffx.23285.1.S1_at11/111+10161180..10162283Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55297.1.S1_at--525--3251Chr01:10136546..10136570 (25 bp)
CAACCCTCCCCTTGTGTTTGGATTG
LOC_Os01g18100
Os.55297.1.S1_at--521--8571Chr01:10136528..10136552 (25 bp)
TGGATTGATCCTGATTTCTCCCCTA
LOC_Os01g18100
Os.55297.1.S1_at--269--1011Chr01:10136473..10136497 (25 bp)
AGGATTCTGGGCCATTTTTCCACTT
LOC_Os01g18100
Os.55297.1.S1_at--626--3311Chr01:10136453..10136477 (25 bp)
CACTTCTTCGCCCATTCTAGTAGGG
LOC_Os01g18100
Os.55297.1.S1_at--1043--4651Chr01:10136402..10136426 (25 bp)
GCGTGCTAATTGTGTCGAGGCTTTC
LOC_Os01g18100
Os.55297.1.S1_at--292--6211Chr01:10136386..10136410 (25 bp)
GAGGCTTTCGCTTTAGCTGATCAGT
LOC_Os01g18100
Os.55297.1.S1_at--132--7851Chr01:10136323..10136347 (25 bp)
GGTAGCGGGATTACTGACTGCATAA
LOC_Os01g18100
Os.55297.1.S1_at--498--5871Chr01:10136161..10136185 (25 bp)
GAGCCTGCTCTGCTACAAGCATTTA
LOC_Os01g18100
Os.55297.1.S1_at--508--7351Chr01:10136089..10136113 (25 bp)
GTGAAATATACTTCCTCCAGTTAAA
LOC_Os01g18100
Os.55297.1.S1_at--164--171Chr01:10136054..10136078 (25 bp)
ATTTTGGACTTCAACACTGTTTCGT
LOC_Os01g18100
Os.55297.1.S1_at--941--4011Chr01:10136032..10136056 (25 bp)
CGTAATGTAGCTTTTGACCGATAAT
LOC_Os01g18100
Target Sequence 
CAACCCTCCCCTTGTGTTTGGATTGATCCTGATTTCTCCCCTAGGAGAAGAAGAAGAAACAGAAAATTCACATAGGATTC
TGGGCCATTTTTCCACTTCTTCGCCCATTCTAGTAGGGCTGTAGAATTGCGGCTGCGCTTCCTGGCGTGCTAATTGTGTC
GAGGCTTTCGCTTTAGCTGATCAGTACATGGTAGATTATGCGAATTTCAGCTTGTGGGAATTTGGTAGCGGGATTACTGA
CTGCATAATGAGTTGGGAAATTTGGGAGTAGTATCCTTCTATTGGGAGTAATTGCTGGTAGTTTCGTGGTAATGTTTGTA
TTTGCAGAGGGGAACAGAGAATTGGAGGCTGGAGGAGCTGATGAAGAGAGAATTTTCTCCTCTTTGAGCCTGCTCTGCTA
CAAGCATTTACTCTAGTTGACAAAAAAAAAGATCATCCTATATGTAATTCTAGTTCAGTGAAATATACTTCCTCCAGTTA
AAAACACATGTCATTTTGGACTTCAACACTGTTTCGTAATGTAGCTTTTGACCGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis