Browse Element(s) Details


Os.43876.2.S1_x_at

Description gb:NM_187714.1
DB_XREF= gi:34902513
GEN=P0581F09.15
TID=Os.43876.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0581F09.15 (P0581F09.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0581F09.15 (P0581F09.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1809011/11expressed protein
LOC_Os08g272101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18060Os.24155.1.S1_at11/111+10110690..10115776expressed protein
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43876.2.S1_x_at--1092--1071Chr01:10133426..10133450 (25 bp)
AGGGCCCCGAGAAGGACACGTCCAT
LOC_Os01g18090
Os.43876.2.S1_x_at--243--1471Chr01:10133435..10133488 (25 bp)
AGAAGGACACGTCCATCAGCGTCGT
LOC_Os01g18090
Os.43876.2.S1_x_at--915--5631Chr01:10133440..10133530 (25 bp)
GACACGTCCATCAGCGTCGTGACGA
LOC_Os01g18090
Os.43876.2.S1_x_at--202--7271Chr01:10133445..10133535 (25 bp)
GTCCATCAGCGTCGTGACGACCGCG
LOC_Os01g18090
Os.43876.2.S1_x_at--1084--1631Chr01:10133518..10133542 (25 bp)
AGCGTCGTGACGACCGCGACCGCGA
LOC_Os01g18090
Os.43876.2.S1_x_at--664--4611Chr01:10133533..10133557 (25 bp)
GCGACCGCGAGACGGCGCTGCTGCG
LOC_Os01g18090
Os.43876.2.S1_x_at--551--8353Chr08:16486776..16486874 (24 bp)
GGCGGCGACGAGCACGACACGGCGG
LOC_Os08g27210
Os.43876.2.S1_x_at--1060--4351Chr01:10133610..10133634 (25 bp)
CCACCTCGGCGGCATCGGCAAGAAG
LOC_Os01g18090
Os.43876.2.S1_x_at--942--9431Chr01:10133624..10133648 (25 bp)
TCGGCAAGAAGGTGGACGCGAGCGC
LOC_Os01g18090
Os.43876.2.S1_x_at--1116--7431Chr01:10133657..10133681 (25 bp)
GTGTCAGGACGCTCGTCGAGCGCAA
LOC_Os01g18090
Os.43876.2.S1_x_at--827--4791Chr01:10133667..10133691 (25 bp)
GCTCGTCGAGCGCAACGATTTCTAC
LOC_Os01g18090
Target Sequence 
AGGGCCCCGAGAAGGACACGTCCATCAGCGTCGTGACGACCGCGACCGCGAGACGGCGCTGCTGCGGCGGCGACGAGCAC
GACACGGCGGCGCGCGCCTCCGTCCTCCACGGTGACCACCACCTCGGCGGCATCGGCAAGAAGGTGGACGCGAGCGCGGG
CGCGGGTGTCAGGACGCTCGTCGAGCGCAACGATTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43876.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis