Browse Element(s) Details


Os.45894.1.S1_at

Description gb:NM_187716.1
DB_XREF= gi:34902517
GEN=P0581F09.17
TID=Os.45894.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45894 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cinnamoyl-CoA reductase (P0581F09.17), mRNA.
PROD=putative cinnamoyl-CoA reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1811011/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein
LOC_Os01g18150OsAffx.23285.1.S1_at11/111+10161180..10162283Protein kinase domain containing protein
LOC_Os01g18160OsAffx.10053.1.S1_at7/111+10163039..10163404hypothetical protein
LOC_Os01g18160OsAffx.10053.1.S1_x_at6/111+10163039..10163404hypothetical protein
LOC_Os01g18170Os.7753.1.S1_at11/111+10164723..10165775Nectarin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45894.1.S1_at--583--10092Chr06:25055001..25055332 (25 bp)
TATGAACCCTAACAGGAGATCAGAT
NONE
Os.45894.1.S1_at--458--8051Chr01:10142115..10142139 (25 bp)
GGAGATCAGATCAGACTCTTGATGA
LOC_Os01g18110
Os.45894.1.S1_at--178--6451Chr01:10142123..10142147 (25 bp)
GATCAGACTCTTGATGAGACTTGTT
LOC_Os01g18110
Os.45894.1.S1_at--6--3431Chr01:10142126..10142150 (25 bp)
CAGACTCTTGATGAGACTTGTTGGA
LOC_Os01g18110
Os.45894.1.S1_at--283--1191Chr01:10142727..10142747 (21 bp)
AGTACCCTATCACCACCAGGTGTGA
LOC_Os01g18110
Os.45894.1.S1_at--390--1811Chr01:10142730..10142930 (25 bp)
ACCCTATCACCACCAGGTGTGAGGA
LOC_Os01g18110
Os.45894.1.S1_at--532--3371Chr01:10142918..10142937 (20 bp)
CACCACCAGGTGTGAGGACAACAGT
LOC_Os01g18110
Os.45894.1.S1_at--876--1711Chr01:10142918..10142941 (24 bp)
ACCAGGTGTGAGGACAACAGTAAGC
LOC_Os01g18110
Os.45894.1.S1_at--308--9231Chr01:10143003..10143027 (25 bp)
TCCTTTGAAAGAGAGCTTGTACAAG
LOC_Os01g18110
Os.45894.1.S1_at--212--2791Chr01:10143011..10143035 (25 bp)
AAGAGAGCTTGTACAAGACAGTGAT
LOC_Os01g18110
Os.45894.1.S1_at--570--3211Chr01:10143024..10143048 (25 bp)
CAAGACAGTGATAAGCTTACAGGAC
LOC_Os01g18110
Target Sequence 
TATGAACCCTAACAGGAGATCAGATCAGACTCTTGATGAGACTTGTTGGAGTGACCTTGAGTTCTGCAAACAAACACAGA
ATTGGTACTGCTACGCGAAGACGGTGGCCGAGAAGACGGCGACGGAGGAGGCGTCGAAGAGAGGTGTGCAGCTGTTGGTG
GTGGTGCCTGCCGTCACCGTGGGGGAGATGCTGCAGCCGACGCTGAACGCCAGCGTCTACAGGGTGGCCACCTACATGAG
GGGCACCAAGAGTGCGTACCCGAACGCCGTCGCCGCGTACGTCGACGTGCGCGACGTCGCCCGCGCGCACGCGCTGGTGT
ACGAGCACCCCGACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGG
GAGCTCTTCCCCCAGTACCCTATCACCACCAGGTGTGAGGACAACAGTAAGCCAATGGTGAAACCTTACCAATTCTCTGT
ACAAAGGCTGGAGGCTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGCTTGTACAAGACAGTGATAAGCTTACAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis