Browse Element(s) Details


OsAffx.10053.1.S1_x_at

Description gb:NM_187720.1
DB_XREF= gi:34902525
GEN=P0581F09.21
TID=OsAffx.10053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0581F09.21 (P0581F09.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g181606/11hypothetical protein
LOC_Os03g211201/11Nucleoside-triphosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein
LOC_Os01g18150OsAffx.23285.1.S1_at11/111+10161180..10162283Protein kinase domain containing protein
LOC_Os01g18160OsAffx.10053.1.S1_at7/111+10163039..10163404hypothetical protein
LOC_Os01g18160OsAffx.10053.1.S1_x_at6/111+10163039..10163404hypothetical protein
LOC_Os01g18170Os.7753.1.S1_at11/111+10164723..10165775Nectarin-1 precursor, putative, expressed
LOC_Os01g18180NANA1+10171168..10174361transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18190NANA1+10177478..10179182transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18200Os.45976.1.S1_x_at1/111+10181956..10185120transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10053.1.S1_x_at--297--1091Chr01:10163029..10163053 (25 bp)
AGGGCTGGAGATGCTACGGCGGCGT
NONE
OsAffx.10053.1.S1_x_at--17--4671Chr01:10163050..10163074 (25 bp)
GCGTGCAGGCAACGGCCGCGCCAAA
LOC_Os01g18160
OsAffx.10053.1.S1_x_at--486--3751Chr01:10163159..10163183 (25 bp)
CTCACGCTCGGATCCACGGAGGAGG
LOC_Os01g18160
OsAffx.10053.1.S1_x_at--57--7731Chr01:10163314..10163338 (25 bp)
GGTGGCGATGACGTCCAGGTATCCA
LOC_Os01g18160
OsAffx.10053.1.S1_x_at--597--6311Chr01:10163320..10163344 (25 bp)
GATGACGTCCAGGTATCCAGAGGTG
LOC_Os01g18160
OsAffx.10053.1.S1_x_at--635--7251Chr01:10163326..10163350 (25 bp)
GTCCAGGTATCCAGAGGTGGGCTTT
LOC_Os01g18160
OsAffx.10053.1.S1_x_at--10--7651Chr01:10163352..10163376 (25 bp)
GGGAGGCGTCGTTCACGGAAGTGAG
LOC_Os01g18160
OsAffx.10053.1.S1_x_at--1161--3971Chr01:10163451..10163471 (21 bp)
CGGGAAGGCATAGTCGTACCCTGGT
NONE
OsAffx.10053.1.S1_x_at--1154--8572Chr01:10163497..10163521 (25 bp)
TGGTGAAGCCGTCCCCGACCAACGG
NONE
OsAffx.10053.1.S1_x_at--747--9891Chr01:10163557..10163581 (25 bp)
TACTCCCGGCCGATGAACTCGTGGC
NONE
OsAffx.10053.1.S1_x_at--364--4291Chr01:10163590..10163614 (25 bp)
CCTCCGCCGCGGATGCCGTGAGGAT
NONE
Target Sequence 
AGGGCTGGAGATGCTACGGCGGCGTGCAGGCAACGGCCGCGCCAAAGCCTGCCCCGTCTTCCAGCTTCCGTCCTTCTCAC
TCGCCGAGCTCTCCCTCGTCGACGCGTCCTCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATCCACGGAGGAGGATCAG
CAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGTCGACGACGAGGGGGAGATGAGCGTGCTCCTGGCTGC
GGCGGCGGAGTACGCGCGGCGGATGCGGCATGTGGGCATGCAGGTGGTGGCGATGACGTCCAGGTATCCAGAGGTGGGCT
TTGGGGAGGCGTCGTTCACGGAAGTGAGGAGGAAGGCGAGGTCGTCGCTGGCGAGGCGGCGCCTCTGGTCGCCGGGAAGG
CATAGTCGTACCCTGGTGAAGCCGTCCCCGACCAACGGCCGCATCCGCTACCACTCGCCCTCGGCGGCCGAGCTACTCCC
GGCCGATGAACTCGTGGCCACCGGCCCCTCCGCCGCGGATGCCGTGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10053.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis