Browse Element(s) Details


OsAffx.23285.1.S1_at

Description tigr:9629.m01762
TID=OsAffx.23285.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1815011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18110Os.45894.1.S1_x_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18110Os.45894.1.S1_at11/111+10141070..10143090NmrA-like family protein, expressed
LOC_Os01g18120Os.20420.1.S1_at11/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18120Os.45894.1.S1_x_at4/111+10145555..10149058NmrA-like family protein, expressed
LOC_Os01g18130OsAffx.23284.1.S1_at8/111+10153196..10155460hypothetical protein
LOC_Os01g18140NANA1+10156552..10157456expressed protein
LOC_Os01g18150OsAffx.23285.1.S1_at11/111+10161180..10162283Protein kinase domain containing protein
LOC_Os01g18160OsAffx.10053.1.S1_at7/111+10163039..10163404hypothetical protein
LOC_Os01g18160OsAffx.10053.1.S1_x_at6/111+10163039..10163404hypothetical protein
LOC_Os01g18170Os.7753.1.S1_at11/111+10164723..10165775Nectarin-1 precursor, putative, expressed
LOC_Os01g18180NANA1+10171168..10174361transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18190NANA1+10177478..10179182transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18200Os.45976.1.S1_x_at1/111+10181956..10185120transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23285.1.S1_at--262--1831Chr01:10161796..10161820 (25 bp)
ACGCCGACGGGAACATCAAGATCTG
LOC_Os01g18150
OsAffx.23285.1.S1_at--518--10631Chr01:10161825..10161849 (25 bp)
TTCGACGACGCGAAAATCATCCCGC
LOC_Os01g18150
OsAffx.23285.1.S1_at--791--491Chr01:10161879..10161903 (25 bp)
ATCGGCTTCGGCTCGCCGGAGTACA
LOC_Os01g18150
OsAffx.23285.1.S1_at--116--4791Chr01:10161889..10161913 (25 bp)
GCTCGCCGGAGTACATGAGCCCCGA
LOC_Os01g18150
OsAffx.23285.1.S1_at--567--7251Chr01:10161987..10162011 (25 bp)
GTCCTGCATCTCTACCAGGGATACT
LOC_Os01g18150
OsAffx.23285.1.S1_at--72--8431Chr01:10162021..10162045 (25 bp)
GGCCTCTCCCGTCGAAGAGGACGCT
LOC_Os01g18150
OsAffx.23285.1.S1_at--529--4131Chr01:10162042..10162066 (25 bp)
CGCTGGAGAGGCTCAGCTACGAGAT
LOC_Os01g18150
OsAffx.23285.1.S1_at--453--1571Chr01:10162056..10162080 (25 bp)
AGCTACGAGATCAGCCACGGCGAGC
LOC_Os01g18150
OsAffx.23285.1.S1_at--560--10611Chr01:10162131..10162155 (25 bp)
TTCGTGTCCGCGTGCCTGCAGAAGT
LOC_Os01g18150
OsAffx.23285.1.S1_at--116--1471Chr01:10162150..10162174 (25 bp)
AGAAGTGCGTGTGCACGCGCGCCAC
LOC_Os01g18150
OsAffx.23285.1.S1_at--274--1151Chr01:10162225..10162249 (25 bp)
AGTCGCGCCGCGTGCTGAAGGAGGT
LOC_Os01g18150
Target Sequence 
ACGCCGACGGGAACATCAAGATCTGCGACTTCGACGACGCGAAAATCATCCCGCCGGGCCCCGGCTCGACCGTCTACTCC
GGCATCGGCTTCGGCTCGCCGGAGTACATGAGCCCCGAGCGGTGCGCGCCCATGGCCATGGCCGGCGCGCGCGTCGCCCG
CGCCGCCGACGTCTGGAGCCTGGGCATCACCGTCCTGCATCTCTACCAGGGATACTGCCCCGCCCGGCCTCTCCCGTCGA
AGAGGACGCTGGAGAGGCTCAGCTACGAGATCAGCCACGGCGAGCCGCCGTCGGTGCCGGACGAGGACACGAGGGCGTCG
ATCGAGCTGCGCGGGTTCGTGTCCGCGTGCCTGCAGAAGTGCGTGTGCACGCGCGCCACGGTGGCGGAGCTGCTCAACCA
CCCGTTCGTCGCCGAACGGGACGTCGCGGAGTCGCGCCGCGTGCTGAAGGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis