Browse Element(s) Details


Os.7126.1.S1_at

Description gb:AK122127.1
DB_XREF= gi:37991773
TID=Os.7126.1
CNT=61
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) tubulin beta-4 chain (P0581F09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132F08, full insert sequence.
FL= gb:AK065323.1 gb:AK122127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1805011/11Tubulin beta-4 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18000Os.27639.1.S1_x_at9/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18000OsAffx.8980.1.S1_at6/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18010OsAffx.22265.1.S1_at10/111+10076116..10077094hypothetical protein
LOC_Os01g18020OsAffx.19614.1.A1_at1/111+10077587..10079052hypothetical protein
LOC_Os01g18030NANA1+10085168..10086339hypothetical protein
LOC_Os01g18040Os.1709.1.S1_x_at5/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040Os.31497.2.S1_x_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040OsAffx.19614.1.A1_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18050Os.7126.1.S1_at11/111+10096074..10099799Tubulin beta-4 chain, putative, expressed
LOC_Os01g18060Os.24155.1.S1_at11/111+10110690..10115776expressed protein
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7126.1.S1_at--733--1351Chr01:10096459..10096483 (25 bp)
AGCAGGTCCCCGAAGACGAGTAATC
LOC_Os01g18050
Os.7126.1.S1_at--842--1371Chr01:10096446..10096470 (25 bp)
AGACGAGTAATCTCGCCGGAGTTTC
LOC_Os01g18050
Os.7126.1.S1_at--205--9271Chr01:10096421..10096445 (25 bp)
TCCTGGGATCCCATCTTGAGTGTCG
LOC_Os01g18050
Os.7126.1.S1_at--533--10771Chr01:10096406..10096430 (25 bp)
TTGAGTGTCGCCTGTTGTGTCCTAC
LOC_Os01g18050
Os.7126.1.S1_at--458--8671Chr01:10096389..10096413 (25 bp)
TGTCCTACCGTTTGGGCAATCTTTA
LOC_Os01g18050
Os.7126.1.S1_at--591--9851Chr01:10096304..10096328 (25 bp)
TACAATGCTGTGTGGTCCGTAGCGC
LOC_Os01g18050
Os.7126.1.S1_at--902--8851Chr01:10096276..10096300 (25 bp)
TGATGCTACTGCCACTTTAATCCGT
LOC_Os01g18050
Os.7126.1.S1_at--381--10491Chr01:10096260..10096284 (25 bp)
TTAATCCGTTTCACCTACCAGACCA
LOC_Os01g18050
Os.7126.1.S1_at--143--8771Chr01:10096235..10096259 (25 bp)
TGTTTGGATTCGTATGCTATCGCAT
LOC_Os01g18050
Os.7126.1.S1_at--297--10811Chr01:10096186..10096210 (25 bp)
TTGTACTGGTTTTGATTGCTCCCGT
LOC_Os01g18050
Os.7126.1.S1_at--815--3871Chr01:10096159..10096183 (25 bp)
CTGTCTCTTGTCTTGCTGCATCGAT
LOC_Os01g18050
Target Sequence 
AGCAGGTCCCCGAAGACGAGTAATCTCGCCGGAGTTTCTCCTGGGATCCCATCTTGAGTGTCGCCTGTTGTGTCCTACCG
TTTGGGCAATCTTTATTATTGTTTCGGTATGATGATGCTTAATTGGTTATGTGCTTTTGGGTAATGTAGTAGTAGTACAA
TGCTGTGTGGTCCGTAGCGCCGCTGATGCTACTGCCACTTTAATCCGTTTCACCTACCAGACCATGTTTGGATTCGTATG
CTATCGCATATGTTTGGGGAGTGTATTGGATTCTTGTACTGGTTTTGATTGCTCCCGTTGCTGTCTCTTGTCTTGCTGCA
TCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis