Browse Element(s) Details


OsAffx.19614.1.A1_at

Description tigr:9640.m01088
TID=OsAffx.19614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g132102/11Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein
LOC_Os04g265801/11hypothetical protein
LOC_Os04g033001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g253601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g220101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g180201/11hypothetical protein
LOC_Os01g180401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g150501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13170Os.27471.1.S1_at11/117+7543851..7548218indeterminate spikelet 1, putative, expressed
LOC_Os07g13180OsAffx.5309.1.S1_at5/117+7548795..7551618hypothetical protein
LOC_Os07g13190Os.31497.2.S1_x_at1/117+7562697..7566028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13200NANA7+7568110..7570312hypothetical protein
LOC_Os07g13210OsAffx.19614.1.A1_at2/117+7570871..7571593Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein
LOC_Os07g13220NANA7+7573736..7574101hypothetical protein
LOC_Os07g13230NANA7+7576011..7576807Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein
LOC_Os07g13240OsAffx.16241.1.S1_at10/117+7593180..7593993hypothetical protein
LOC_Os07g13249NANA7+7596089..7596388NA

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19614.1.A1_at--83--72713Chr12:18405334..18405358 (25 bp)
GTCCTTCGACGTATGCAGTTGTCAT
NONE
OsAffx.19614.1.A1_at--237--36536Chr12:18405337..18405361 (25 bp)
CTTCGACGTATGCAGTTGTCATTTC
NONE
OsAffx.19614.1.A1_at--767--6912Chr12:6192021..6192045 (25 bp)
GTATGCAGTTGTCATTTCGACAATA
NONE
OsAffx.19614.1.A1_at--766--9352Chr12:6192037..6192061 (25 bp)
TCGACAATAGCTGGCGCCGACGTTG
NONE
OsAffx.19614.1.A1_at--384--1231Chr12:6192085..6192109 (25 bp)
AGAGTAAATGGCACCGAAGAGGGTC
NONE
OsAffx.19614.1.A1_at--1027--1651Chr12:6192180..6192204 (25 bp)
AGCCTTCGGCGCCATCGTTGAAACT
NONE
OsAffx.19614.1.A1_at--1150--3631Chr12:6192183..6192207 (25 bp)
CTTCGGCGCCATCGTTGAAACTGGG
NONE
OsAffx.19614.1.A1_at--1092--1571Chr12:6192252..6192276 (25 bp)
AGCTCTTGCCACTTCGTCAGGGCTG
NONE
OsAffx.19614.1.A1_at--807--9191Chr12:6192258..6192282 (25 bp)
TGCCACTTCGTCAGGGCTGGTGCCA
NONE
OsAffx.19614.1.A1_at--367--1611Chr12:6192389..6192413 (25 bp)
AGCTGGCAACAGCTTCGACCGCGCT
NONE
OsAffx.19614.1.A1_at--299--8511Chr12:6192392..6192416 (25 bp)
TGGCAACAGCTTCGACCGCGCTTGC
NONE
Target Sequence 
GTCCTTCGACGTATGCAGTTGTCATTTCGACAATAGCTGGCGCCGACGTTGGGGACCTCCGAGCGAAACCACTGAGAGTA
AATGGCACCGAAGAGGGTCGTGAAGGAGAAGGTTGCAAAGCGAATGGGGAGTGAAGCAGGAGAGGAGATGGCCGCCGAAG
AGGGAGCCGAGCCTTCGGCGCCATCGTTGAAACTGGGGGAGCACCGTCGGCTTCGGCACCTGCGCCGCAACCGCCACCTT
CAGCTCTTGCCACTTCGTCAGGGCTGGTGCCAAACACGGTCGACGCGGCGAAGGCAGCTACGGCAGCAAGGGCGCTCCAG
ATCAGGGCAGAGATCCTTTCGACGAGCCAGCTGCTGGTGCCCCAAGCCGCTTCGTCACAGCTGGCAACAGCTTCGACCGC
GCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19614.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis