Browse Element(s) Details


Os.27471.1.S1_at

Description gb:AK111874.1
DB_XREF= gi:37988537
TID=Os.27471.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative indeterminate spikelet 1 (P0407H12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046C12, full insert sequence.
FL= gb:AK111874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1317011/11indeterminate spikelet 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13140OsAffx.1455.1.S1_at11/117+7522318..7530761retrotransposon protein, putative, unclassified
LOC_Os07g13140OsAffx.4851.1.S1_x_at1/117+7522318..7530761retrotransposon protein, putative, unclassified
LOC_Os07g13160Os.31647.1.S1_at11/117+7540188..7541183expressed protein
LOC_Os07g13160OsAffx.30595.1.S1_at1/117+7540188..7541183expressed protein
LOC_Os07g13170Os.27471.1.S1_at11/117+7543851..7548218indeterminate spikelet 1, putative, expressed
LOC_Os07g13180OsAffx.5309.1.S1_at5/117+7548795..7551618hypothetical protein
LOC_Os07g13190Os.31497.2.S1_x_at1/117+7562697..7566028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13200NANA7+7568110..7570312hypothetical protein
LOC_Os07g13210OsAffx.19614.1.A1_at2/117+7570871..7571593Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009408biological_processresponse to heat
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27471.1.S1_at--97--9591Chr07:7547628..7547652 (25 bp)
TCATCAGGATTCTCTACGGGCACCG
LOC_Os07g13170
Os.27471.1.S1_at--1005--4511Chr07:7547781..7547805 (25 bp)
GCCGCTTGCTGATAACATTCGTCGT
LOC_Os07g13170
Os.27471.1.S1_at--71--3311Chr07:7547796..7547820 (25 bp)
CATTCGTCGTTTGTCCAGAGAGGGA
LOC_Os07g13170
Os.27471.1.S1_at--975--1331Chr07:7547814..7547838 (25 bp)
AGAGGGACCTTCTCCATATGATATC
LOC_Os07g13170
Os.27471.1.S1_at--480--271Chr07:7547829..7547853 (25 bp)
ATATGATATCCCTCTCTATGTTCCA
LOC_Os07g13170
Os.27471.1.S1_at--625--5211Chr07:7547868..7547892 (25 bp)
GAATTCTCACGCTCATGATTCTTTT
LOC_Os07g13170
Os.27471.1.S1_at--785--9811Chr07:7547941..7547965 (25 bp)
TAAACACCCTTGTACCTCTTTGACT
LOC_Os07g13170
Os.27471.1.S1_at--341--8311Chr07:7547994..7548018 (25 bp)
GGCTAAAAGTGATTGGCCCTCCCTA
LOC_Os07g13170
Os.27471.1.S1_at--924--1091Chr07:7548087..7548111 (25 bp)
AGTGGAGCGAAGCTTTGCCCTTTTC
LOC_Os07g13170
Os.27471.1.S1_at--334--8551Chr07:7548157..7548181 (25 bp)
TGGAGATAGCTTCCCAGTGGTCACT
LOC_Os07g13170
Os.27471.1.S1_at--482--6691Chr07:7548182..7548206 (25 bp)
GTTCCACTGTACTCTGTCATAGTTT
LOC_Os07g13170
Target Sequence 
TCATCAGGATTCTCTACGGGCACCGTCGCCGACGCCGCCCGCTCGCCTTCCTCCCGCCCCCATCCATTTCCCGGCCACCA
CCAGTTCTACTTCCCCCCGACCGCCTGACTGCCACCTATTCTGGTGGAGGCGACACCTCACCGTGCATCCACCGCCGCTT
GCTGATAACATTCGTCGTTTGTCCAGAGAGGGACCTTCTCCATATGATATCCCTCTCTATGTTCCACCTGGTTATGATCA
GAATTCTCACGCTCATGATTCTTTTATCTTCATTTTTGAGTGCGAAACCACGAATCGTGACCNTGCTACCAGGTAAACAC
CCTTGTACCTCTTTGACTCTACAATAAAATTAATGTAAGATATTCTGGCTAAAAGTGATTGGCCCTCCCTACTGTATTTT
TACAGAGTTGTAATTTGAACAGTGGGCACTAAAGCTGGGGCCCACTCGCACCAGTGTCTAGTGGAGCGAAGCTTTGCCCT
TTTCTTGCTATCCAGCAACTATTCCTCCGCCTGCCTCCATTGCTGACAGTGGAGATAGCTTCCCAGTGGTCACTGTTCCA
CTGTACTCTGTCATAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis