Browse Element(s) Details


OsAffx.4851.1.S1_x_at

Description tigr:9634.m01688
TID=OsAffx.4851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1677011/11expressed protein
LOC_Os07g131401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16760Os.27435.1.S1_x_at4/116+9708411..9709587hypothetical protein
LOC_Os06g16770OsAffx.4851.1.S1_x_at11/116+9711602..9711993expressed protein
LOC_Os06g16780OsAffx.26306.1.S1_s_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16780OsAffx.26306.2.S1_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16790OsAffx.27677.1.S1_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16790OsAffx.27677.1.S1_s_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16800OsAffx.28610.4.S1_s_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.4.S1_x_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.2.S1_x_at5/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.3.S1_at2/116+9728463..9729124hypothetical protein
LOC_Os06g16810OsAffx.4854.1.S1_at11/116+9733901..9734545Polygalacturonase precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4851.1.S1_x_at--1114--3651Chr06:9711754..9711945 (25 bp)
CTTCACGAGGTCTCGGGCAGCAGCA
LOC_Os06g16770
OsAffx.4851.1.S1_x_at--994--1512Chr07:7528416..7528435 (20 bp)
AGCAGCATGGCTGTTGGCCTGTTTG
LOC_Os07g13140
OsAffx.4851.1.S1_x_at--1098--8451Chr06:9711722..9711746 (25 bp)
TGGCCTGTTTGGTATTGATGCAGCA
LOC_Os06g16770
OsAffx.4851.1.S1_x_at--918--8853Chr07:27087182..27087228 (24 bp)
TGATGCAGCAGTCGGCCGCGTGGAG
NONE
OsAffx.4851.1.S1_x_at--220--9054Chr11:23631049..23631095 (24 bp)
TGCAGCAGTCGGCCGCGTGGAGGAA
NONE
OsAffx.4851.1.S1_x_at--324--5031Chr06:9711700..9711724 (25 bp)
GCAGTCGGCCGCGTGGAGGAAGACG
LOC_Os06g16770
OsAffx.4851.1.S1_x_at--587--5311Chr06:9711656..9711680 (25 bp)
GAAGGATCGGTATACGAAGGAGTCC
LOC_Os06g16770
OsAffx.4851.1.S1_x_at--664--2911Chr06:9711655..9711679 (25 bp)
AAGGATCGGTATACGAAGGAGTCCG
LOC_Os06g16770
OsAffx.4851.1.S1_x_at--766--6371Chr06:9711652..9711676 (25 bp)
GATCGGTATACGAAGGAGTCCGACC
LOC_Os06g16770
OsAffx.4851.1.S1_x_at--691--4872Chr09:5265749..5265770 (22 bp)
GTATACGAAGGAGTCCGACCCCGAG
NONE
OsAffx.4851.1.S1_x_at--118--11Chr06:9711633..9711657 (25 bp)
CCGACCCCGAGGAGGAAATGGCAGT
LOC_Os06g16770
Target Sequence 
CTTCACGAGGTCTCGGGCAGCAGCATGGCTGTTGGCCTGTTTGGTATTGATGCAGCAGTCGGCCGCGTGGAGGAAGACGA
GACCGAGACCGAGCTGGCGAAGGATCGGTATACGAAGGAGTCCGACCCCGAGGAGGAAATGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4851.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis