Browse Element(s) Details


OsAffx.28610.4.S1_x_at

Description tigr:9634.m01691
TID=OsAffx.28610.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1680011/11hypothetical protein
LOC_Os07g268602/11hypothetical protein
LOC_Os01g532941/11NADPH oxidase, putative, expressed
LOC_Os04g222901/11hypothetical protein
LOC_Os06g261601/11hypothetical protein
LOC_Os03g221301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16760Os.27435.1.S1_x_at4/116+9708411..9709587hypothetical protein
LOC_Os06g16770OsAffx.4851.1.S1_x_at11/116+9711602..9711993expressed protein
LOC_Os06g16780OsAffx.26306.1.S1_s_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16780OsAffx.26306.2.S1_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16790OsAffx.27677.1.S1_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16790OsAffx.27677.1.S1_s_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16800OsAffx.28610.4.S1_s_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.4.S1_x_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.2.S1_x_at5/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.3.S1_at2/116+9728463..9729124hypothetical protein
LOC_Os06g16810OsAffx.4854.1.S1_at11/116+9733901..9734545Polygalacturonase precursor, putative
LOC_Os06g16820OsAffx.27678.1.S1_at11/116+9742064..9742879hypothetical protein
LOC_Os06g16830NANA6+9743691..9744196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16840OsAffx.30536.1.S1_x_at1/116+9749163..9752141transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28610.4.S1_x_at--88--491Chr06:9728497..9728521 (25 bp)
ATCGGTGGATCGTATCGGTTCGAGC
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--895--10034Chr06:9728537..9728559 (23 bp)
TAGAGAACGTTCTTGCGCATCCGGT
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--265--4971Chr06:9728553..9728732 (25 bp)
GCATCCGGTTCTCACCAAGCAAAGA
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--400--3951Chr06:9728714..9728737 (24 bp)
CGGTTCTCACCAAGCAAAGAAACGG
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--66--9952Chr06:9728849..9728873 (25 bp)
TACGAGGGTGTTAGGGATGAGCCAC
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--1063--1991Chr06:9728905..9728929 (25 bp)
ACTCACCGGAGTGGGAGGATTCGCC
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--298--1091Chr06:9728958..9728982 (25 bp)
AGGGCGGTGATGTTCCGGCGGTGCA
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--557--6112Chr07:15543373..15543397 (25 bp)
GAGTGCGTCGGCTCGATCGGCTTCA
LOC_Os07g26860
OsAffx.28610.4.S1_x_at--534--492Chr07:15543388..15543412 (25 bp)
ATCGGCTTCAGTCGAACCTCGATGG
LOC_Os07g26860
OsAffx.28610.4.S1_x_at--838--4911Chr06:9729034..9729058 (25 bp)
GCTTGCTGACGAAGTACATCGGCTT
LOC_Os06g16800
OsAffx.28610.4.S1_x_at--380--2831Chr06:9729045..9729069 (25 bp)
AAGTACATCGGCTTGGTGTTGCTTC
LOC_Os06g16800
Target Sequence 
ATCGGTGGATCGTATCGGTTCGAGCACAAAAGAGAAAATGTAGAGAACGTTCTTGCGCATCCGGTTCTCACCAAGCAAAG
AAACGGAGGCAGCGAGGTCCAAGGAGCGGCGGAGACGGTGGTTGTTGGCCCACGGCGGCAAAACTCCAGCGTCGACGTCG
CCGGGTCGACTCAAGGCGCGAACTGCAACTTCGAGAGTACGAGGGTGTTAGGGATGAGCCACAGAGGGTGCATGCGCGAG
GAATCCGGCGGAAACTCACCGGAGTGGGAGGATTCGCCGGCGGCGGCGGATGGCCGGAAAAGGGGGAGGGCGGTGATGTT
CCGGCGGTGCAGAGTGCGTCGGCTCGATCGGCTTCAGTCGAACCTCGATGGGGTCGAGGCGAGCTTGCTGACGAAGTACA
TCGGCTTGGTGTTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28610.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis