Browse Element(s) Details


OsAffx.28610.2.S1_x_at

Description tigr:9634.m02590
TID=OsAffx.28610.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2616011/11hypothetical protein
LOC_Os07g268609/11hypothetical protein
LOC_Os01g532949/11NADPH oxidase, putative, expressed
LOC_Os03g221307/11hypothetical protein
LOC_Os06g168005/11hypothetical protein
LOC_Os08g261505/11hypothetical protein
LOC_Os04g222904/11hypothetical protein
LOC_Os10g243404/11hypothetical protein
LOC_Os12g066801/11retrotransposon protein, putative, unclassified
LOC_Os12g128001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g443701/11hypothetical protein
LOC_Os06g175901/11hypothetical protein
LOC_Os03g392001/11hypothetical protein
LOC_Os05g178901/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26120OsAffx.15620.1.S1_at11/116+15279892..15280654hypothetical protein
LOC_Os06g26130OsAffx.14839.1.S1_at1/116+15288366..15291158hypothetical protein
LOC_Os06g26130Os.31845.1.S1_x_at1/116+15288366..15291158hypothetical protein
LOC_Os06g26140NANA6+15293147..15294511hypothetical protein
LOC_Os06g26150OsAffx.22699.1.S1_x_at3/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26150OsAffx.18275.1.S1_x_at2/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26150OsAffx.13786.1.S1_x_at1/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26160OsAffx.28610.2.S1_x_at11/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.2.S1_at10/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_at6/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_x_at4/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.3.S1_at3/116+15301894..15304365hypothetical protein
LOC_Os06g26160Os.4760.1.S1_at1/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.4.S1_x_at1/116+15301894..15304365hypothetical protein
LOC_Os06g26170OsAffx.4944.1.S1_at10/116+15310053..15311897hypothetical protein
LOC_Os06g26180OsAffx.27828.1.S1_at11/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.23345.1.S1_at2/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.28650.1.S1_x_at1/116+15313826..15315157hypothetical protein
LOC_Os06g26190Os.21300.2.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190Os.21300.2.S1_x_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190OsAffx.27854.1.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26210OsAffx.15622.1.S1_at11/116+15328732..15331084hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28610.2.S1_x_at--738--7975Chr07:15542900..15542924 (25 bp)
GGATCGAATCGGTTCGAGCACAAAA
LOC_Os07g26860
OsAffx.28610.2.S1_x_at--501--3036Chr07:15542906..15543123 (25 bp)
AATCGGTTCGAGCACAAAAGAGAAA
LOC_Os07g26860
OsAffx.28610.2.S1_x_at--841--4258Chr08:14110681..14110705 (25 bp)
CCGGGTCGACTCAAGGCGCGAACTG
NONE
OsAffx.28610.2.S1_x_at--1038--8397Chr08:15271011..15271035 (25 bp)
GGCGCGAACTGCAACTTCGAGAGTA
NONE
OsAffx.28610.2.S1_x_at--1035--58510Chr10:12142847..12142965 (25 bp)
GAGCCACAGAGGGTGCATGCGCGAG
LOC_Os10g24340
OsAffx.28610.2.S1_x_at--588--36111Chr10:12142896..12142920 (25 bp)
CTTGGTGTTGCTTCGGTGGTGAGGA
LOC_Os10g24340
OsAffx.28610.2.S1_x_at--930--958Chr10:12142964..12142991 (25 bp)
AGGACGGTGCCCACCACGTGCTCGA
LOC_Os10g24340
OsAffx.28610.2.S1_x_at--215--3358Chr10:12142981..12143005 (25 bp)
CACGTGCTCGACAGATTGGTCCTAG
LOC_Os10g24340
OsAffx.28610.2.S1_x_at--141--4819Chr08:15271191..15271215 (25 bp)
GCTCGACAGATTGGTCCTAGGGCAA
NONE
OsAffx.28610.2.S1_x_at--415--2099Chr08:15271196..15271220 (25 bp)
ACAGATTGGTCCTAGGGCAAAAGGG
NONE
OsAffx.28610.2.S1_x_at--565--99324Chr12:26537756..26537775 (20 bp)
TACGGGATCAAATCAGCTGGCACGC
NONE
Target Sequence 
GGATCGAATCGGTTCGAGCACAAAAGAGAAAATGTANAGAACNTTCTTGCGCATCCGNNAGTGGTGGTGGTGAGGNNAAT
GGTGNGNCTNTNGNNNNTGNNNCATGNGCTNCNNCNNNNGNGTNNCNNGGGTGCTCACCAAGCAGAGAAACNGAGGCAGC
GAGNTCCAGGGAGNGGCGGAGACGGTGGTTGTTGGCCNACGGNGGCAAAACTCCNGCNTCGACGTCGCCGGGTCGACTCA
AGGCGCGAACTGCAACTTCGAGAGTANGGGGGTGTTAGGGATGAGCCACAGAGGGTGCATGCGCGAGGAANCCGNCNGAA
ACTCACCGNANCTTGGTGTTGCTTCGGTGGTGAGGAACGGCGGCCGGAGCGGCGTCGGCGGTTCAGGTGGCCGGCGGCGA
GGACGGTGCCCACCACGTGCTCGACAGATTGGTCCTAGGGCAAAAGGGGTACGGGATCAAATCAGCTGGCACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28610.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis