Browse Element(s) Details


OsAffx.28650.1.S1_x_at

Description tigr:9635.m02790
TID=OsAffx.28650.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g287009/11hypothetical protein
LOC_Os08g171906/11hypothetical protein
LOC_Os11g262802/11hypothetical protein
LOC_Os06g261801/11hypothetical protein
LOC_Os01g228801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28670OsAffx.8127.1.S1_at1/117+16786551..16793577retrotransposon protein, putative, unclassified
LOC_Os07g28680OsAffx.28649.1.S1_at9/117+16795094..16796359hypothetical protein
LOC_Os07g28690OsAffx.5475.1.S1_at11/117+16797046..16797626hypothetical protein
LOC_Os07g28700OsAffx.28650.1.S1_x_at9/117+16800528..16801444hypothetical protein
LOC_Os07g28710NANA7+16809299..1680962860S acidic ribosomal protein P2B, putative
LOC_Os07g28720Os.55731.1.S1_at3/117+16814814..16815104hypothetical protein
LOC_Os07g28730NANA7+16817436..16817795retrotransposon protein, putative, unclassified
LOC_Os07g28740NANA7+16818531..16820587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28750NANA7+16825711..16828102retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28650.1.S1_x_at--869--9431Chr08:10528745..10528769 (25 bp)
TCGGTGTCAGCGATGGTGGCAGCGC
LOC_Os08g17190
OsAffx.28650.1.S1_x_at--221--4496Chr11:14549607..14549631 (25 bp)
GCCGGCGGCCGGACTTGAGGAAGAA
LOC_Os11g26280
OsAffx.28650.1.S1_x_at--734--10872Chr08:10528324..10528348 (25 bp)
TTGGCGACGCTCATGGCGCAGCGGC
LOC_Os08g17190
OsAffx.28650.1.S1_x_at--139--6433Chr08:10528281..10528305 (25 bp)
GATCATCGGGAACGGCGAAGCGACC
LOC_Os08g17190
OsAffx.28650.1.S1_x_at--944--1935Chr11:25216281..25216473 (25 bp)
ACGGCGGCGCTCTGGACACCGAGGA
NONE
OsAffx.28650.1.S1_x_at--89--8533Chr11:14549777..14549801 (25 bp)
TGGACACCGAGGACGCCGACGAGCT
LOC_Os11g26280
OsAffx.28650.1.S1_x_at--775--791NONE
ATGTGGATTCAATGGTGTGTCTAAC
NONE
OsAffx.28650.1.S1_x_at--142--3212Chr11:14550295..14550320 (25 bp)
CAATGGTGTGTCTAACCAGGTGGTT
NONE
OsAffx.28650.1.S1_x_at--700--7451Chr07:16800576..16800600 (25 bp)
GTGTCTAACCAGGTGGTTTGCTGAA
LOC_Os07g28700
OsAffx.28650.1.S1_x_at--922--9771Chr07:16800571..16800595 (25 bp)
TAACCAGGTGGTTTGCTGAAGATTG
LOC_Os07g28700
OsAffx.28650.1.S1_x_at--439--7511Chr07:16800564..16800588 (25 bp)
GTGGTTTGCTGAAGATTGGATGATA
LOC_Os07g28700
Target Sequence 
TCGGTGTCAGCGATGGTGGCAGCGCGAGCGGCGGATGCTCCGGCGACGGNNNGANANNGNNNGNNNNNNGNNNNNNNNNC
NTTCCNGNCTNCGGNCTGCCAAGNAGAGNAGNGGAANGGNTCAANGANNANCTAAGGATGCTNCANNNNCGAGGAANTGC
GCCGAAGCTNACCCGAGAGCGAGGAACGGACGACGTTGGCCGGCGGCCGGACTTGAGGAAGAAAGAGAGGATCTCCTTNT
NGGCNGNTCTTCAGCNCGATTCCCTTNGCAGGCCTTNTCCTNGAACNTTGGCGACGCTCATGGCGCAGCGGCTNGGTCGG
AGATGCANCGGATCATCGGGAACGGCGAAGCGACCGACGGCGGCGCTCTGGACACCGAGGACGCCGACGAGCTCGACGNA
ANNTGTTNNNTAGATGGAAGATGGGGTATGGGGAAGAATGTGGATTCAATGGTGTGTCTAACCAGGTGGTTTGCTGAAGA
TTGGATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28650.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis