Browse Element(s) Details


Os.55731.1.S1_at

Description gb:AK111137.1
DB_XREF= gi:32996346
TID=Os.55731.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D10, full insert sequence.
FL= gb:AK108677.1 gb:AK111137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g287203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28670OsAffx.8127.1.S1_at1/117+16786551..16793577retrotransposon protein, putative, unclassified
LOC_Os07g28680OsAffx.28649.1.S1_at9/117+16795094..16796359hypothetical protein
LOC_Os07g28690OsAffx.5475.1.S1_at11/117+16797046..16797626hypothetical protein
LOC_Os07g28700OsAffx.28650.1.S1_x_at9/117+16800528..16801444hypothetical protein
LOC_Os07g28710NANA7+16809299..1680962860S acidic ribosomal protein P2B, putative
LOC_Os07g28720Os.55731.1.S1_at3/117+16814814..16815104hypothetical protein
LOC_Os07g28730NANA7+16817436..16817795retrotransposon protein, putative, unclassified
LOC_Os07g28740NANA7+16818531..16820587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28750NANA7+16825711..16828102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28760OsAffx.26141.3.S1_x_at10/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28760OsAffx.26141.4.S1_x_at7/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28760OsAffx.26141.4.S1_at4/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28770Os.45976.1.S1_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28770Os.45976.1.S1_x_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55731.1.S1_at--459--8691Chr07:16814881..16814905 (25 bp)
TGTGCGCCTCCGTGGCGTGGCTCTA
LOC_Os07g28720
Os.55731.1.S1_at--721--7971Chr07:16814839..16814863 (25 bp)
GGATCCGCCGGAGCAGCGAGATCTC
LOC_Os07g28720
Os.55731.1.S1_at--1152--1491Chr07:16814828..16814852 (25 bp)
AGCAGCGAGATCTCCACCCGGCGGT
LOC_Os07g28720
Os.55731.1.S1_at--130--1811Chr07:16814813..16814837 (25 bp)
ACCCGGCGGTGGCACCAAGATTAGT
NONE
Os.55731.1.S1_at--763--7531Chr07:16814805..16814829 (25 bp)
GTGGCACCAAGATTAGTCGACAACT
NONE
Os.55731.1.S1_at--551--1151Chr07:16814791..16814815 (25 bp)
AGTCGACAACTCGACATGCCCTGGG
NONE
Os.55731.1.S1_at--290--7691Chr07:16814767..16814791 (25 bp)
GGGTAACCACTCTGTTTCTCTTCAC
NONE
Os.55731.1.S1_at--934--10791Chr07:16814720..16814744 (25 bp)
TTGTTCGATTTGATCTCTGGTCCAT
NONE
Os.55731.1.S1_at--180--691Chr07:16814697..16814721 (25 bp)
ATGACTCCATGTGATCTTGAAGCAA
NONE
Os.55731.1.S1_at--719--9751Chr07:16814662..16814686 (25 bp)
TAATGATATGTTTCAATTCGAGCAT
NONE
Os.55731.1.S1_at--84--9051Chr07:16814632..16814656 (25 bp)
TGCATGAGATTTTCCTAAGCTTCGA
NONE
Target Sequence 
TGTGCGCCTCCGTGGCGTGGCTCTACGCGCTCCCCGCCTTCGGGATCCGCCGGAGCAGCGAGATCTCCACCCGGCGGTGG
CACCAAGATTAGTCGACAACTCGACATGCCCTGGGGGTAACCACTCTGTTTCTCTTCACCCCCATTTTTTTTTCTTTTTT
TTTGTTCGATTTGATCTCTGGTCCATGACTCCATGTGATCTTGAAGCAAAGCAAAGAAATAATGATATGTTTCAATTCGA
GCATATAATTGCATGAGATTTTCCTAAGCTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis