Browse Element(s) Details

Os.21300.2.S1_at

Description

gb:AK111393.1
DB_XREF= gi:32996602
TID=Os.21300.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C07, full insert sequence.
FL= gb:AK111393.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g26190	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g26150	OsAffx.22699.1.S1_x_at	3/11	6	+	15295175..15301561	retrotransposon protein, putative, unclassified
LOC_Os06g26150	OsAffx.18275.1.S1_x_at	2/11	6	+	15295175..15301561	retrotransposon protein, putative, unclassified
LOC_Os06g26150	OsAffx.13786.1.S1_x_at	1/11	6	+	15295175..15301561	retrotransposon protein, putative, unclassified
LOC_Os06g26160	OsAffx.28610.2.S1_x_at	11/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.2.S1_at	10/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.1.S1_at	6/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.1.S1_x_at	4/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.3.S1_at	3/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	Os.4760.1.S1_at	1/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26160	OsAffx.28610.4.S1_x_at	1/11	6	+	15301894..15304365	hypothetical protein
LOC_Os06g26170	OsAffx.4944.1.S1_at	10/11	6	+	15310053..15311897	hypothetical protein
LOC_Os06g26180	OsAffx.27828.1.S1_at	11/11	6	+	15313826..15315157	hypothetical protein
LOC_Os06g26180	OsAffx.23345.1.S1_at	2/11	6	+	15313826..15315157	hypothetical protein
LOC_Os06g26180	OsAffx.28650.1.S1_x_at	1/11	6	+	15313826..15315157	hypothetical protein
LOC_Os06g26190	Os.21300.2.S1_at	1/11	6	+	15323219..15325452	hypothetical protein
LOC_Os06g26190	Os.21300.2.S1_x_at	1/11	6	+	15323219..15325452	hypothetical protein
LOC_Os06g26190	OsAffx.27854.1.S1_at	1/11	6	+	15323219..15325452	hypothetical protein
LOC_Os06g26210	OsAffx.15622.1.S1_at	11/11	6	+	15328732..15331084	hypothetical protein
LOC_Os06g26234	OsAffx.15623.1.S1_at	11/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	Os.27031.1.S1_at	11/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	OsAffx.28472.1.A1_x_at	10/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	OsAffx.13933.1.S1_x_at	1/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234	Os.57509.1.A1_at	1/11	6	+	15334688..15364532	Alpha amylase, catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.21300.2.S1_at--570--491	1	Chr01:24607856..24607880 (25 bp)	GCTTGTTTGATACTTTCGTTACTAA	NONE
Os.21300.2.S1_at--1027--683	1	Chr01:24607860..24607884 (25 bp)	GTTTGATACTTTCGTTACTAATGCT	NONE
Os.21300.2.S1_at--847--647	1	Chr01:24607864..24607888 (25 bp)	GATACTTTCGTTACTAATGCTATCG	NONE
Os.21300.2.S1_at--342--1029	1	Chr01:24607869..24607893 (25 bp)	TTTCGTTACTAATGCTATCGAGCCT	NONE
Os.21300.2.S1_at--839--939	1	Chr01:24607871..24607895 (25 bp)	TCGTTACTAATGCTATCGAGCCTCA	NONE
Os.21300.2.S1_at--254--677	1	Chr01:24607873..24607897 (25 bp)	GTTACTAATGCTATCGAGCCTCACT	NONE
Os.21300.2.S1_at--267--991	1	Chr01:24607875..24607899 (25 bp)	TACTAATGCTATCGAGCCTCACTAA	NONE
Os.21300.2.S1_at--1004--373	1	Chr01:24607877..24607901 (25 bp)	CTAATGCTATCGAGCCTCACTAATC	NONE
Os.21300.2.S1_at--834--61	1	Chr01:24607880..24607904 (25 bp)	ATGCTATCGAGCCTCACTAATCTTG	NONE
Os.21300.2.S1_at--863--1015	2	Chr01:24607884..24607908 (25 bp)	TATCGAGCCTCACTAATCTTGCAGT	NONE
Os.21300.2.S1_at--433--49	1	Chr01:24607885..24607909 (25 bp)	ATCGAGCCTCACTAATCTTGCAGTC	NONE

Target Sequence

GCTTGTTTGATACTTTCGTTACTAATGCTATCGAGCCTCACTAATCTTGCAGTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis