Browse Element(s) Details


OsAffx.13933.1.S1_x_at

Description tigr:9632.m02142
TID=OsAffx.13933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2310011/11hypothetical protein
LOC_Os06g262341/11Alpha amylase, catalytic domain containing protein, expressed
LOC_Os04g119001/11hypothetical protein
LOC_Os10g048101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23070Os.46785.2.S1_x_at4/114+13081793..13085518retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g23080OsAffx.31869.5.S1_x_at6/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080Os.48015.1.A1_at4/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080Os.48015.1.A1_x_at4/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080OsAffx.31869.2.S1_at1/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080OsAffx.31869.4.S1_x_at1/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23090OsAffx.28472.1.S1_x_at11/114+13099683..13099883hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_x_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23109NANA4+13113156..13114003NA
LOC_Os04g23120OsAffx.13934.1.S1_at11/114+13115131..13116702hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_x_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23140Os.27641.1.A1_at11/114+13129401..13130778expressed protein
LOC_Os04g23140OsAffx.3864.1.S1_x_at11/114+13129401..13130778expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0003844molecular_function1,4-alpha-glucan branching enzyme activity
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13933.1.S1_x_at--85--70115Chr08:18046995..18047258 (25 bp)
GTACTATGGCGAAGGCCCTTGACGT
NONE
OsAffx.13933.1.S1_x_at--858--5291Chr04:13105744..13105764 (21 bp)
GAAGGCCCTTGACGTTGTGCCTTAT
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--294--8931Chr04:13105735..13105759 (25 bp)
TGACGTTGTGCCTTATTGGTACTAT
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--76--4214Chr04:13105653..13105677 (25 bp)
CCCCAGCTTGGAAGCAACATATTTT
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--324--3613Chr04:13105973..13105997 (25 bp)
CTTGGAAGCAACATATTTTCGCCCC
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--649--5151Chr04:13105417..13105441 (25 bp)
GCAACCCTTGATATCGTGCCTCATT
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--704--2611Chr04:13105415..13105439 (25 bp)
AACCCTTGATATCGTGCCTCATTGG
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--590--10771Chr04:13105410..13105434 (25 bp)
TTGATATCGTGCCTCATTGGCGCTA
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--453--6512Chr04:13105408..13105432 (25 bp)
GATATCGTGCCTCATTGGCGCTATG
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--525--252Chr04:13105407..13105431 (25 bp)
ATATCGTGCCTCATTGGCGCTATGG
LOC_Os04g23100
OsAffx.13933.1.S1_x_at--276--512Chr04:13105405..13105429 (25 bp)
ATCGTGCCTCATTGGCGCTATGGCG
LOC_Os04g23100
Target Sequence 
GTACTATGGCGAAGGCCCTTGACGTTGTGCCTTATTGGTACTATGGCGAAGGGCGTTGCGTGTGGCGAAAGGTGTCCAGC
GGCTTGGGCGGCTTCATAGCCCCCCAGCTTGGAAGCAACATATTTTCGCCCCCAACCCTTGACGCCATACCTTATTGGTA
CTATGGCGAAGGGTGTGGGTGGGCGAAACCTATTCGCCCGCAACCCTTTACGCCGTACCTCATTGGTACTATGGCGAAGG
GTATGGCGTGTGGCGAAGCCTCTTCGCCCGCAGCCCTTAACGCCGTGCCATATTGGCATTATGGCGAAGGGCGTGGGTTG
GGGAAACCTGTTCGCCCGCAACCCTTGATATCGTGCCTCATTGGCGCTATGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13933.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis