Browse Element(s) Details


Os.27641.1.A1_at

Description gb:CF327907
DB_XREF= gi:33804064
DB_XREF=NACL--02-J07.g1
CLONE=NACL--02-J07
TID=Os.27641.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27641 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2314011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23100OsAffx.13933.1.S1_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_x_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23109NANA4+13113156..13114003NA
LOC_Os04g23120OsAffx.13934.1.S1_at11/114+13115131..13116702hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_x_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23140Os.27641.1.A1_at11/114+13129401..13130778expressed protein
LOC_Os04g23140OsAffx.3864.1.S1_x_at11/114+13129401..13130778expressed protein
LOC_Os04g23150OsAffx.13935.1.S1_at10/114+13137807..13138793hypothetical protein
LOC_Os04g23170NANA4+13149471..13149941hypothetical protein
LOC_Os04g23180Os.12031.1.A1_at6/114+13152221..13159250cation efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27641.1.A1_at--649--1591Chr04:13130301..13130325 (25 bp)
AGCTCGAACCATCTGCGCAATTTCA
LOC_Os04g23140
Os.27641.1.A1_at--110--2651Chr04:13130307..13130331 (25 bp)
AACCATCTGCGCAATTTCAGTTGAC
LOC_Os04g23140
Os.27641.1.A1_at--282--9251Chr04:13130380..13130404 (25 bp)
TCCTTCGCTGAGTCCAGTGATGCAC
LOC_Os04g23140
Os.27641.1.A1_at--118--9351Chr04:13130384..13130408 (25 bp)
TCGCTGAGTCCAGTGATGCACACAC
LOC_Os04g23140
Os.27641.1.A1_at--1118--10493Chr12:27323991..27324015 (25 bp)
TTCAGTTAACCCTCCCTTCTCAGGG
NONE
Os.27641.1.A1_at--174--7732Chr12:27324014..27324033 (20 bp)
GGGTGGCTCTTTTGCTTTCAGCTTT
NONE
Os.27641.1.A1_at--1081--8312Chr04:13130632..13130656 (25 bp)
GGCTCTTTTGCTTTCAGCTTTTATC
LOC_Os04g23140
Os.27641.1.A1_at--1006--4871Chr04:13130641..13130665 (25 bp)
GCTTTCAGCTTTTATCCTTGGTTAT
LOC_Os04g23140
Os.27641.1.A1_at--552--4892Chr12:27324036..27324055 (20 bp)
GCTTTTATCCTTGGTTATGTAATGG
NONE
Os.27641.1.A1_at--644--7871Chr04:13130673..13130697 (25 bp)
GGTTTATCCCCTAATTCTGCTCTTG
LOC_Os04g23140
Os.27641.1.A1_at--310--10351Chr04:13130675..13130699 (25 bp)
TTTATCCCCTAATTCTGCTCTTGCT
LOC_Os04g23140
Target Sequence 
AGCTCGAACCATCTGCGCAATTTCAGTTGACAGGGTTGATGTTAGAGCTCCTCAGATTCAATGATGAGCCTCGNGGGGAT
CCTTCGCTGAGTCCAGTGATGCACACACCAAAATCTACGGCTCAGCAACAAACCTCGGTCTTGTGCCGTTTCCGTGGAGG
CAGCTGATGGGGATTAACGGTTTGTCAAGCGGAGTGCACATCTTTTGAGGCCCAGGGTAGCAGTNGTCGCGGCTTCGCCG
CAGATCCCTATCGACTTGCTCCTTTTTCTGCTATTAGGTTATTTCAGGAAGATTGATTTCGTAGTTCAGTTAACCCTCCC
TTCTCAGGGGTGGCTCTTTTGCTTTCAGCTTTTATCCTTGGTTATGTAATGGGGTTTATCCCCTAATTCTGCTCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27641.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis