Browse Element(s) Details


Os.12031.1.A1_at

Description gb:CB676847
DB_XREF= gi:29680572
DB_XREF=OSJNEe13F14.r
CLONE=OSJNEe13F14
TID=Os.12031.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12031 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_564594.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g231806/11cation efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23140Os.27641.1.A1_at11/114+13129401..13130778expressed protein
LOC_Os04g23140OsAffx.3864.1.S1_x_at11/114+13129401..13130778expressed protein
LOC_Os04g23150OsAffx.13935.1.S1_at10/114+13137807..13138793hypothetical protein
LOC_Os04g23170NANA4+13149471..13149941hypothetical protein
LOC_Os04g23180Os.12031.1.A1_at6/114+13152221..13159250cation efflux family protein, expressed
LOC_Os04g23190NANA4+13164045..13166478retrotransposon protein, putative, LINE subclass
LOC_Os04g23200OsAffx.3865.1.S1_at11/114+13168113..13170509hypothetical protein
LOC_Os04g23210OsAffx.3866.1.S1_at11/114+13177443..13191375expressed protein
LOC_Os04g23210Os.14884.1.S1_s_at11/114+13177443..13191375expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12031.1.A1_at--785--911Chr04:13154213..13154315 (25 bp)
AGGCTGATCCGGTTGTAGATGCTCT
LOC_Os04g23180
Os.12031.1.A1_at--9--31Chr04:13154166..13154190 (25 bp)
ATTGGACCAGGATTCTTTAGATTCA
LOC_Os04g23180
Os.12031.1.A1_at--334--1091Chr04:13152460..13152484 (25 bp)
AGTTCCGGGAGGCTTCATTGTCCAA
LOC_Os04g23180
Os.12031.1.A1_at--327--351Chr04:13152420..13152443 (24 bp)
ATAAGGGTCATGTCTAACTACGGTG
LOC_Os04g23180
Os.12031.1.A1_at--831--7991Chr04:13152317..13152341 (25 bp)
GGATGTAGTCGAAGCTCTTGGGTAT
LOC_Os04g23180
Os.12031.1.A1_at--829--5671Chr04:13152235..13152259 (25 bp)
GACATTGAAGCACACAACCCAGAAG
LOC_Os04g23180
Os.12031.1.A1_at--574--1811Chr04:13152219..13152243 (25 bp)
ACCCAGAAGGGCTTTCACTTTAGAG
NONE
Os.12031.1.A1_at--1142--10211Chr04:13152171..13152195 (25 bp)
TATTCTCCATTCGATTGGTCTCACT
NONE
Os.12031.1.A1_at--430--8571Chr04:13152156..13152180 (25 bp)
TGGTCTCACTTGCTGTCAATTCCAA
NONE
Os.12031.1.A1_at--51--5691Chr04:13152116..13152140 (25 bp)
GACATTGGTATTCATCCTCAGCGAT
NONE
Os.12031.1.A1_at--152--4631Chr04:13152096..13152120 (25 bp)
GCGATTTTGCTGTTGGCTTGTTGCC
NONE
Target Sequence 
AGGCTGATCCGGTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCTTTAGATTCAAAGCTGAA
ATTGATTTCAATGGAGTAGTCCTGGTGCAGAATTATTTGGAAAGGACTGGACGTGGAGAATGGGCAAAACAGTTCCGGGA
GGCTTCATTGTCCAAGGATGATACGGAGTTAATAAGGGTCATGTCTAACTACGGTGAGGATGTAGTCGAAGCTCTTGGGT
ATGAAGTGGATCGGCTGGAGTCAGAGATCCAAAAGATTGTGCCTGGGATTAAACATGTTGACATTGAAGCACACAACCCA
GAAGGGCTTTCACTTTAGAGTAACAATTTTGTAGATGTGGATATATTCTCCATTCGATTGGTCTCACTTGCTGTCAATTC
CAACACAATTTTTTGTATGACATTGGTATTCATCCTCAGCGATTTTGCTGTTGGCTTGTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12031.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis