Browse Element(s) Details


OsAffx.3865.1.S1_at

Description tigr:9632.m02152
TID=OsAffx.3865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2320011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23170NANA4+13149471..13149941hypothetical protein
LOC_Os04g23180Os.12031.1.A1_at6/114+13152221..13159250cation efflux family protein, expressed
LOC_Os04g23190NANA4+13164045..13166478retrotransposon protein, putative, LINE subclass
LOC_Os04g23200OsAffx.3865.1.S1_at11/114+13168113..13170509hypothetical protein
LOC_Os04g23210OsAffx.3866.1.S1_at11/114+13177443..13191375expressed protein
LOC_Os04g23210Os.14884.1.S1_s_at11/114+13177443..13191375expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3865.1.S1_at--851--1471Chr04:13168732..13168756 (25 bp)
AGAATATCGTGGCTGAAGCCGCCGC
LOC_Os04g23200
OsAffx.3865.1.S1_at--439--6211Chr04:13168609..13168717 (25 bp)
GAGGCTCGCCGAAACAGAATGTCGT
LOC_Os04g23200
OsAffx.3865.1.S1_at--210--3531Chr04:13168464..13168488 (25 bp)
CATGCCGCCGCCAATAAGAAAGGTG
LOC_Os04g23200
OsAffx.3865.1.S1_at--231--7091Chr04:13168424..13168448 (25 bp)
GTCAAGCTCCGCAAGCAGTACAACA
LOC_Os04g23200
OsAffx.3865.1.S1_at--576--2471Chr04:13168403..13168427 (25 bp)
AACACTGGCGCCAAACGTCGGAGTG
LOC_Os04g23200
OsAffx.3865.1.S1_at--1084--1871Chr04:13168349..13168373 (25 bp)
ACGATGGAACGATGCCAGCGCGTCC
LOC_Os04g23200
OsAffx.3865.1.S1_at--555--4571Chr04:13168332..13168356 (25 bp)
GCGCGTCCTCTTCAAGCGAATGGGA
LOC_Os04g23200
OsAffx.3865.1.S1_at--1027--8011Chr04:13168272..13168296 (25 bp)
GGAGGTGCTTGCTCAATATGTCGCA
LOC_Os04g23200
OsAffx.3865.1.S1_at--1081--2971Chr04:13168248..13168272 (25 bp)
AATGTTCGAGGGACCGCTCCTGCAG
LOC_Os04g23200
OsAffx.3865.1.S1_at--1025--4671Chr04:13168202..13168226 (25 bp)
GCGGTGTTCGGCATCGACATTGAAG
LOC_Os04g23200
OsAffx.3865.1.S1_at--1106--1911Chr04:13168163..13168187 (25 bp)
ACGGACTCCCTTGTCGAGATGGTGG
LOC_Os04g23200
Target Sequence 
AGAATATCGTGGCTGAAGCCGCCGCGACGAACACGCCAAGAGGCTCGCCGAAACAGAATGTCGTGGGTAAGGCCGCCGTG
ACGAACACGCCAAGCGGTGCGACGACGACAACAACGACGTCAGTGACGCCAGCACAGCTCGCCCTGGACAGCCTGTTTGC
AACACCACCAATGGCGGTCATCCCCATGCCGCCGCCAATAAGAAAGGTGGCAGTCGGCCGCCGTGTCAAGCTCCGCAAGC
AGTACAACACTGGCGCCAAACGTCGGAGTGCCCGCATCGCTAAGCAGCCGGCATTGCCGACGATGGAACGATGCCAGCGC
GTCCTCTTCAAGCGAATGGGATGGCTGCCTGGCGGTGACGGCGCCGCTTCGATGGAGGAGGTGCTTGCTCAATATGTCGC
AATGTTCGAGGGACCGCTCCTGCAGCACACCATCGCGGCGCTCACGGCGGTGTTCGGCATCGACATTGAAGACGACGACA
ACCCCACGGACTCCCTTGTCGAGATGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis