Browse Element(s) Details


OsAffx.3866.1.S1_at

Description tigr:9632.m02153
TID=OsAffx.3866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2321011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23180Os.12031.1.A1_at6/114+13152221..13159250cation efflux family protein, expressed
LOC_Os04g23190NANA4+13164045..13166478retrotransposon protein, putative, LINE subclass
LOC_Os04g23200OsAffx.3865.1.S1_at11/114+13168113..13170509hypothetical protein
LOC_Os04g23210OsAffx.3866.1.S1_at11/114+13177443..13191375expressed protein
LOC_Os04g23210Os.14884.1.S1_s_at11/114+13177443..13191375expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_at11/114+13195559..13200242expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_x_at11/114+13195559..13200242expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3866.1.S1_at--1122--7991Chr04:13190783..13190807 (25 bp)
GGATGGGATTACAGGCATCCTTGCT
LOC_Os04g23210
OsAffx.3866.1.S1_at--490--9611Chr04:13190887..13190911 (25 bp)
TCATCATGTGCAGTGTTTCGAGCTT
LOC_Os04g23210
OsAffx.3866.1.S1_at--555--3511Chr04:13190891..13190915 (25 bp)
CATGTGCAGTGTTTCGAGCTTTGAA
LOC_Os04g23210
OsAffx.3866.1.S1_at--608--7331Chr04:13190894..13190918 (25 bp)
GTGCAGTGTTTCGAGCTTTGAAAAC
LOC_Os04g23210
OsAffx.3866.1.S1_at--625--9371Chr04:13190904..13190928 (25 bp)
TCGAGCTTTGAAAACATGGTGGCAG
LOC_Os04g23210
OsAffx.3866.1.S1_at--1055--8951Chr04:13190912..13190936 (25 bp)
TGAAAACATGGTGGCAGGAAAACCC
LOC_Os04g23210
OsAffx.3866.1.S1_at--559--4331Chr04:13190946..13190970 (25 bp)
CCATCTCCGACGAGCAAGTCGGTCA
LOC_Os04g23210
OsAffx.3866.1.S1_at--379--1491Chr04:13190958..13190982 (25 bp)
AGCAAGTCGGTCACGCTCTGTACAT
LOC_Os04g23210
OsAffx.3866.1.S1_at--606--1151Chr04:13190962..13190986 (25 bp)
AGTCGGTCACGCTCTGTACATTACA
LOC_Os04g23210
OsAffx.3866.1.S1_at--998--7811Chr04:13190966..13190990 (25 bp)
GGTCACGCTCTGTACATTACATCGG
LOC_Os04g23210
OsAffx.3866.1.S1_at--2--9691Chr04:13190968..13190992 (25 bp)
TCACGCTCTGTACATTACATCGGCA
LOC_Os04g23210
Target Sequence 
GGATGGGATTACAGGCATCCTTGCTCCTCTCATGAAACCACTTCGGATGATGGTCATGACTTGCTAGAACATCATCGATG
ATCGCTCATGCCTTACTGGAGGTTTCATCATGTGCAGTGTTTCGAGCTTTGAAAACATGGTGGCAGGAAAACCCCCGTCG
CTGCCATCTCCGACGAGCAAGTCGGTCACGCTCTGTACATTACATCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis