Browse Element(s) Details


Os.14884.1.S1_s_at

Description gb:BI807975
DB_XREF= gi:15855163
DB_XREF=B007E12
CLONE=B007E12
TID=Os.14884.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14884 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566837.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2321011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23180Os.12031.1.A1_at6/114+13152221..13159250cation efflux family protein, expressed
LOC_Os04g23190NANA4+13164045..13166478retrotransposon protein, putative, LINE subclass
LOC_Os04g23200OsAffx.3865.1.S1_at11/114+13168113..13170509hypothetical protein
LOC_Os04g23210OsAffx.3866.1.S1_at11/114+13177443..13191375expressed protein
LOC_Os04g23210Os.14884.1.S1_s_at11/114+13177443..13191375expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_at11/114+13195559..13200242expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_x_at11/114+13195559..13200242expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14884.1.S1_s_at--243--8551Chr04:13190741..13190765 (25 bp)
TGGAGAACAGTTGAAGCTATTGCTT
LOC_Os04g23210
Os.14884.1.S1_s_at--934--51Chr04:13190759..13190783 (25 bp)
ATTGCTTGAATTTGACATGCCTGAG
LOC_Os04g23210
Os.14884.1.S1_s_at--761--9251Chr04:13190807..13190831 (25 bp)
TCCTCTCATGAAACCACTTCGGATG
LOC_Os04g23210
Os.14884.1.S1_s_at--943--7811Chr04:13190834..13190858 (25 bp)
GGTCATGACTTGCTAGAACATCATC
LOC_Os04g23210
Os.14884.1.S1_s_at--1127--471Chr04:13190986..13191010 (25 bp)
ATCGGCAGATTTAGGGAGGTCCCCT
LOC_Os04g23210
Os.14884.1.S1_s_at--39--5631Chr04:13191015..13191039 (25 bp)
GACACACTGTAGAGTTTCGAGTTTT
LOC_Os04g23210
Os.14884.1.S1_s_at--1076--6771Chr04:13191057..13191081 (25 bp)
GTTAGCTCGATAGGATTCTTTGTAC
LOC_Os04g23210
Os.14884.1.S1_s_at--726--6851Chr04:13191086..13191110 (25 bp)
GTTTGTACCTGTCCTTTGTAATGTC
LOC_Os04g23210
Os.14884.1.S1_s_at--244--7132Chr04:13191108..13191132 (25 bp)
GTCATACAAATCACATTCCATTCTT
LOC_Os04g23210
Os.14884.1.S1_s_at--495--91Chr04:13191122..13191146 (25 bp)
ATTCCATTCTTTCATAAGCTTCAGG
LOC_Os04g23210
Os.14884.1.S1_s_at--122--10151Chr04:13191198..13191222 (25 bp)
TATCTGTTGTCAAAAGGATGCCCTG
LOC_Os04g23210
Target Sequence 
TGGAGAACAGTTGAAGCTATTGCTTGAATTTGACATGCCTGAGGATGGATTACAGCATCCTTGCTCCTCTCATGAAACCA
CTTCGGATGATGGGTCATGACTTGCTAGAACATCATCGATGATCGCTCATNGCCTTACTGGAGGTTTCATCATGTNCAGT
GTTCGAGCTTTNGAAAACNTGGTGNCAGGAAANCCCCGTCGCNTGCCATNTCCGACGAGCANAGTCGGTCACNNCTCTGT
ACNTTACATCGGCAGATTTAGGGAGGTCCCCTTGTNGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGT
TAGCTCGATAGGATTCTTTGTACNATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAA
GCTTCAGGNCAGAGTTGGGCTGTGTACACNTAATTGTTTGAAGAAATGTNCAGGCAATCATATCTGTTGTCAAAAGGATG
CCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14884.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis