Browse Element(s) Details


OsAffx.28472.1.S1_x_at

Description tigr:9632.m00132
TID=OsAffx.28472.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3432011/11hypothetical protein
LOC_Os04g1191011/11Transposable element protein, putative, MuDR
LOC_Os04g2309011/11hypothetical protein
LOC_Os04g2275011/11hypothetical protein
LOC_Os08g2963011/11hypothetical protein
LOC_Os04g0226411/11retrotransposon protein, putative, unclassified
LOC_Os04g2267011/11hypothetical protein
LOC_Os12g1368010/11hypothetical protein
LOC_Os04g0228010/11F-box domain containing protein, expressed
LOC_Os08g2796010/11hypothetical protein
LOC_Os04g255109/11hypothetical protein
LOC_Os06g245806/11hypothetical protein
LOC_Os12g137001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34280Os.36351.1.S1_at10/113+19466301..19470237expressed protein
LOC_Os03g34290OsAffx.13185.1.S1_at11/113+19471133..19472273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34300Os.27680.1.S1_at11/113+19473524..19480531TMS membrane family protein, putative, expressed
LOC_Os03g34310Os.22470.2.S1_x_at11/113+19482712..19486344expressed protein
LOC_Os03g34310Os.22470.1.A1_at11/113+19482712..19486344expressed protein
LOC_Os03g34320OsAffx.28472.1.S1_x_at11/113+19490053..19492213hypothetical protein
LOC_Os03g34320Os.50810.2.S1_at1/113+19490053..19492213hypothetical protein
LOC_Os03g35326NANA3+19499126..19503727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28472.1.S1_x_at--628--44117Chr08:16903516..16903540 (25 bp)
GCCATGACGAGTTCGGCATCAAGGA
LOC_Os08g27960
OsAffx.28472.1.S1_x_at--969--43318Chr12:7716501..7716524 (24 bp)
CCATGACGAGTTCGGCATCAAGGAG
LOC_Os12g13680
OsAffx.28472.1.S1_x_at--999--35119Chr12:7716501..7716525 (25 bp)
CATGACGAGTTCGGCATCAAGGAGG
LOC_Os12g13680
OsAffx.28472.1.S1_x_at--201--6919Chr12:13995383..13995407 (25 bp)
ATGACGAGTTCGGCATCAAGGAGGC
NONE
OsAffx.28472.1.S1_x_at--288--89318Chr12:13995384..13995408 (25 bp)
TGACGAGTTCGGCATCAAGGAGGCC
NONE
OsAffx.28472.1.S1_x_at--870--57720Chr12:13995385..13995409 (25 bp)
GACGAGTTCGGCATCAAGGAGGCCC
NONE
OsAffx.28472.1.S1_x_at--153--18719Chr12:13995386..13995410 (25 bp)
ACGAGTTCGGCATCAAGGAGGCCCA
NONE
OsAffx.28472.1.S1_x_at--1114--67120Chr12:13995390..13995414 (25 bp)
GTTCGGCATCAAGGAGGCCCAACAG
NONE
OsAffx.28472.1.S1_x_at--600--106121Chr12:13995391..13995415 (25 bp)
TTCGGCATCAAGGAGGCCCAACAGG
NONE
OsAffx.28472.1.S1_x_at--155--94522Chr12:13995392..13995416 (25 bp)
TCGGCATCAAGGAGGCCCAACAGGC
NONE
OsAffx.28472.1.S1_x_at--985--82521Chr12:7716513..7716537 (25 bp)
GGCATCAAGGAGGCCCAACAGGCCG
LOC_Os12g13680
Target Sequence 
GCCATGACGAGTTCGGCATCAAGGAGGCCCAACAGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28472.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis