Browse Element(s) Details


OsAffx.13185.1.S1_at

Description tigr:9631.m03368
TID=OsAffx.13185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3429011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34230OsAffx.13184.1.S1_at11/113+19447164..19447988hypothetical protein
LOC_Os03g34230OsAffx.17410.1.S1_x_at1/113+19447164..19447988hypothetical protein
LOC_Os03g34240NANA3+19450461..19453301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34250NANA3+19453712..19455966retrotransposon protein, putative, unclassified
LOC_Os03g34260Os.1709.1.S1_x_at6/113+19458427..19460569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34270OsAffx.13843.1.S1_at1/113+19461429..19464738hypothetical protein
LOC_Os03g34280Os.36351.1.S1_at10/113+19466301..19470237expressed protein
LOC_Os03g34290OsAffx.13185.1.S1_at11/113+19471133..19472273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34300Os.27680.1.S1_at11/113+19473524..19480531TMS membrane family protein, putative, expressed
LOC_Os03g34310Os.22470.2.S1_x_at11/113+19482712..19486344expressed protein
LOC_Os03g34310Os.22470.1.A1_at11/113+19482712..19486344expressed protein
LOC_Os03g34320OsAffx.28472.1.S1_x_at11/113+19490053..19492213hypothetical protein
LOC_Os03g34320Os.50810.2.S1_at1/113+19490053..19492213hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13185.1.S1_at--36--3951Chr03:19472219..19472243 (25 bp)
CGGCTGACAATGACCAGTGTGCACA
LOC_Os03g34290
OsAffx.13185.1.S1_at--937--8331Chr03:19472218..19472242 (25 bp)
GGCTGACAATGACCAGTGTGCACAA
LOC_Os03g34290
OsAffx.13185.1.S1_at--783--4751Chr03:19472217..19472241 (25 bp)
GCTGACAATGACCAGTGTGCACAAC
LOC_Os03g34290
OsAffx.13185.1.S1_at--831--3831Chr03:19472216..19472240 (25 bp)
CTGACAATGACCAGTGTGCACAACG
LOC_Os03g34290
OsAffx.13185.1.S1_at--863--5591Chr03:19472214..19472238 (25 bp)
GACAATGACCAGTGTGCACAACGAG
LOC_Os03g34290
OsAffx.13185.1.S1_at--715--2991Chr03:19472211..19472235 (25 bp)
AATGACCAGTGTGCACAACGAGGTT
LOC_Os03g34290
OsAffx.13185.1.S1_at--865--9731Chr03:19472185..19472209 (25 bp)
TCAATGCGCGAACGGCAATGAAGAC
LOC_Os03g34290
OsAffx.13185.1.S1_at--592--7251Chr03:19472139..19472163 (25 bp)
GTCCGAGAGGGCAACACAGCTACAG
LOC_Os03g34290
OsAffx.13185.1.S1_at--704--4051Chr03:19471882..19472130 (25 bp)
CGATGCAGCGCGGAACGACGAAGTT
LOC_Os03g34290
OsAffx.13185.1.S1_at--1127--631Chr03:19471880..19472128 (25 bp)
ATGCAGCGCGGAACGACGAAGTTGA
LOC_Os03g34290
OsAffx.13185.1.S1_at--344--3371Chr03:19471877..19471897 (21 bp)
CAGCGCGGAACGACGAAGTTGAAGC
LOC_Os03g34290
Target Sequence 
CGGCTGACAATGACCAGTGTGCACAACGAGGTTGTCAATGCGCGAACGGCAATGAAGACGACGAAAGTGGCGAAGCTGCG
GTCCGAGAGGGCAACACAGCTACAGCTCCATGTCGATGCAGCGCGGAACGACGAAGTTGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis