Browse Element(s) Details


OsAffx.13184.1.S1_at

Description tigr:9631.m03362
TID=OsAffx.13184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3423011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34190Os.45173.1.S1_x_at3/113+19419912..19426712retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34200Os.45173.1.S1_x_at4/113+19428882..19431728retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34210Os.24648.1.A1_at3/113+19433619..19437279retrotransposon, putative, centromere-specific
LOC_Os03g34220NANA3+19443131..19445601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34230OsAffx.13184.1.S1_at11/113+19447164..19447988hypothetical protein
LOC_Os03g34230OsAffx.17410.1.S1_x_at1/113+19447164..19447988hypothetical protein
LOC_Os03g34240NANA3+19450461..19453301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34250NANA3+19453712..19455966retrotransposon protein, putative, unclassified
LOC_Os03g34260Os.1709.1.S1_x_at6/113+19458427..19460569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34270OsAffx.13843.1.S1_at1/113+19461429..19464738hypothetical protein
LOC_Os03g34280Os.36351.1.S1_at10/113+19466301..19470237expressed protein
LOC_Os03g34290OsAffx.13185.1.S1_at11/113+19471133..19472273retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13184.1.S1_at--96--4991Chr03:19447464..19447488 (25 bp)
GCATCCTCATTCTTCAGTGCTGCTG
LOC_Os03g34230
OsAffx.13184.1.S1_at--166--2791Chr03:19447494..19447518 (25 bp)
AAGAGTGCCCGTCGTGGTGATCTTC
LOC_Os03g34230
OsAffx.13184.1.S1_at--869--431Chr03:19447513..19447537 (25 bp)
ATCTTCTCCTTGTGTCATCAGTAGA
LOC_Os03g34230
OsAffx.13184.1.S1_at--342--7451Chr03:19447524..19447548 (25 bp)
GTGTCATCAGTAGAGCCACTGCCTG
LOC_Os03g34230
OsAffx.13184.1.S1_at--111--10671Chr03:19447575..19447599 (25 bp)
TTCCGGACACGAGCGTCGTCGGAGA
LOC_Os03g34230
OsAffx.13184.1.S1_at--891--8051Chr03:19447595..19447619 (25 bp)
GGAGACCACCATGCTCGTCACGGGT
LOC_Os03g34230
OsAffx.13184.1.S1_at--850--9191Chr03:19447619..19447643 (25 bp)
TGCCACGGGCTACATTGGGTGTTTT
LOC_Os03g34230
OsAffx.13184.1.S1_at--883--31Chr03:19447632..19447656 (25 bp)
ATTGGGTGTTTTGTCGTCCGCGAGC
LOC_Os03g34230
OsAffx.13184.1.S1_at--790--8751Chr03:19447676..19447700 (25 bp)
TGTAGTCACTGACTCGCTGTCACGC
LOC_Os03g34230
OsAffx.13184.1.S1_at--998--5171Chr03:19447725..19447749 (25 bp)
GCAATGGCCCCGACGAGTTGGTCGC
LOC_Os03g34230
OsAffx.13184.1.S1_at--1110--10571Chr03:19447775..19447799 (25 bp)
TTCTCCGACGTCACCGAGGCGGGCA
LOC_Os03g34230
Target Sequence 
GCATCCTCATTCTTCAGTGCTGCTGCCCCTAAGAGTGCCCGTCGTGGTGATCTTCTCCTTGTGTCATCAGTAGAGCCACT
GCCTGCTGCTTCGGTGGCGGCGGCGCAACCCTTCCGGACACGAGCGTCGTCGGAGACCACCATGCTCGTCACGGGTGCCA
CGGGCTACATTGGGTGTTTTGTCGTCCGCGAGCTGCTCCGCTGGGGCCACCCTGTAGTCACTGACTCGCTGTCACGCGCT
CCCGGAGCGGCTTGGGCGGCCGCAATGGCCCCGACGAGTTGGTCGCGGACCTCGGCCCCACCTGCGTCGTCTTCTCCGAC
GTCACCGAGGCGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis