Browse Element(s) Details


OsAffx.13843.1.S1_at

Description tigr:9632.m01540
TID=OsAffx.13843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1709011/11hypothetical protein
LOC_Os03g342701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17050Os.9584.1.S1_at11/114+9316706..9325115expressed protein
LOC_Os04g17064Os.9692.1.S1_at11/114+9327512..9334651C9orf114 protein, putative, expressed
LOC_Os04g17080NANA4+9336702..9337472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17090OsAffx.13843.1.S1_at11/114+9341395..9341763hypothetical protein
LOC_Os04g17100Os.10097.1.S1_at10/114+9343205..9344407farnesylated protein 1, putative, expressed
LOC_Os04g17120OsAffx.13844.1.S1_at11/114+9352386..9355469hypothetical protein
LOC_Os04g17130OsAffx.3809.1.S1_at10/114+9357468..9367968Formin Homology 2 Domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13843.1.S1_at--156--3951Chr04:9341699..9341723 (25 bp)
CGGACCCCTGCAAGATTGGCGAAGA
LOC_Os04g17090
OsAffx.13843.1.S1_at--1092--9431Chr04:9341660..9341684 (25 bp)
TCGGCACTTCGCTGTTCAACAAGGC
LOC_Os04g17090
OsAffx.13843.1.S1_at--187--10511Chr04:9341646..9341670 (25 bp)
TTCAACAAGGCGGATCTGGCGAAGC
LOC_Os04g17090
OsAffx.13843.1.S1_at--326--9411Chr04:9341621..9341645 (25 bp)
TCGTCGCGTCAAGTACAGTGGTTGA
LOC_Os04g17090
OsAffx.13843.1.S1_at--718--2431Chr04:9341597..9341621 (25 bp)
AAAAGCAAGCCTTCTTCGCTGGCGA
LOC_Os04g17090
OsAffx.13843.1.S1_at--29--10551Chr04:9341564..9341588 (25 bp)
TTCATCGCCCCGTTGATGGCTGGAC
LOC_Os04g17090
OsAffx.13843.1.S1_at--1155--10751Chr04:9341552..9341576 (25 bp)
TTGATGGCTGGACCGTTGTCTTCGC
LOC_Os04g17090
OsAffx.13843.1.S1_at--681--3651Chr04:9341524..9341548 (25 bp)
CTTCTTTGATGCAGGTCTTCGCTTC
LOC_Os04g17090
OsAffx.13843.1.S1_at--742--2032Chr04:9341467..9341491 (25 bp)
ACTTTTCCAAGTGGAGCTTCCTCAA
LOC_Os04g17090
OsAffx.13843.1.S1_at--857--8891Chr04:9341441..9341465 (25 bp)
TGAGTCCCTCAGTCCTAGTTCGGAT
LOC_Os04g17090
OsAffx.13843.1.S1_at--182--1151Chr04:9341431..9341455 (25 bp)
AGTCCTAGTTCGGATCGCGATCTTC
LOC_Os04g17090
Target Sequence 
CGGACCCCTGCAAGATTGGCGAAGACTGCACCGGCTTCCTCGGCACTTCGCTGTTCAACAAGGCGGATCTGGCGAAGCTC
GTCGCGTCAAGTACAGTGGTTGAAAAGCAAGCCTTCTTCGCTGGCGATGCAGTGGTTCATCGCCCCGTTGATGGCTGGAC
CGTTGTCTTCGCCGCCTTCTTTGATGCAGGTCTTCGCTTCCCATGCGACGTCCTGCTCCCCAAGGTCCTTCAACTTTTCC
AAGTGGAGCTTCCTCAACTGAGTCCCTCAGTCCTAGTTCGGATCGCGATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis