Browse Element(s) Details


OsAffx.13844.1.S1_at

Description tigr:9632.m01543
TID=OsAffx.13844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1712011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17064Os.9692.1.S1_at11/114+9327512..9334651C9orf114 protein, putative, expressed
LOC_Os04g17080NANA4+9336702..9337472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17090OsAffx.13843.1.S1_at11/114+9341395..9341763hypothetical protein
LOC_Os04g17100Os.10097.1.S1_at10/114+9343205..9344407farnesylated protein 1, putative, expressed
LOC_Os04g17120OsAffx.13844.1.S1_at11/114+9352386..9355469hypothetical protein
LOC_Os04g17130OsAffx.3809.1.S1_at10/114+9357468..9367968Formin Homology 2 Domain containing protein
LOC_Os04g17140OsAffx.11392.2.S1_x_at8/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.3.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.1.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13844.1.S1_at--821--4851Chr04:9355247..9355271 (25 bp)
GCTACCGAGCTTGCCGCTAGCAAAA
LOC_Os04g17120
OsAffx.13844.1.S1_at--572--4851Chr04:9355232..9355256 (25 bp)
GCTAGCAAAATCAGTCGTTCCACCG
LOC_Os04g17120
OsAffx.13844.1.S1_at--983--10391Chr04:9354701..9354725 (25 bp)
TTATTGTTTTAATCGGCGCGGTGTC
LOC_Os04g17120
OsAffx.13844.1.S1_at--74--6851Chr04:9354222..9354242 (21 bp)
GTTTCTGAGGTTTTCCGCAAGACTT
LOC_Os04g17120
OsAffx.13844.1.S1_at--1125--7051Chr04:9353785..9353809 (25 bp)
GTAAGGTCCTTGTCAGCACTATATG
LOC_Os04g17120
OsAffx.13844.1.S1_at--20--7311Chr04:9353661..9353685 (25 bp)
GTGCGGATGCACTAGCCTATTATTT
LOC_Os04g17120
OsAffx.13844.1.S1_at--977--6151Chr04:9353632..9353656 (25 bp)
GAGGATCCTGCAAAATGTCCTTTTG
LOC_Os04g17120
OsAffx.13844.1.S1_at--835--2811Chr04:9353384..9353408 (25 bp)
AAGTTGGTGCTCTTTCGTTCTAGAA
LOC_Os04g17120
OsAffx.13844.1.S1_at--46--1891Chr04:9352544..9352568 (25 bp)
ACGTCTACTCTTCTGAACTTTGTGG
LOC_Os04g17120
OsAffx.13844.1.S1_at--943--5271Chr04:9352443..9352467 (25 bp)
GAAGGAGGCAAACCAGGACCGTACT
LOC_Os04g17120
OsAffx.13844.1.S1_at--1042--5811Chr04:9352427..9352451 (25 bp)
GACCGTACTCCTGTAAAGTCTAAAG
LOC_Os04g17120
Target Sequence 
GCTACCGAGCTTGCCGCTAGCAAAATCAGTCGTTCCACCGCCGGAAATTATTGTTTTAATCGGCGCGGTGTCTACTGGCA
AATTACCATGTTTAAGGAGTGTTTTCCTCTAAAATTGCAACTGAAAGCATTGGCTGAGGAGCAGCAAGCAGTTGTGAAAG
GGCTGCAGAAGGTTGAACAAGAACTAGCTGCTTCAGAAAGTGATGGGCCCGTTTCTGAGGTTTTCCGCAAGACTTTGAAG
GAGTTCACTGATGCTTCTGGAGCTGATGTAAGGTCCTTGTCAGCACTATATGCTGAAGTAGGTAAAAGTGCGGATGCACT
AGCCTATTATTTTGGAGAGGATCCTGCAAAATGTCCTTTTGAACAAGGAAGTTGGTGCTCTTTCGTTCTAGAATTTTCAA
GACCAGTCACGTCTACTCTTCTGAACTTTGTGGGGTTATTTCGGAAAGCACATGAGGAGAACATAAAGCAGATTGAGGCT
GACAAGAAGAAAGCACAGAAGGAGGCTGAGAAGGAGGCAAACCAGGACCGTACTCCTGTAAAGTCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis