Browse Element(s) Details


Os.10097.1.S1_at

Description gb:AK121488.1
DB_XREF= gi:37991111
TID=Os.10097.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150J09, full insert sequence.
FL= gb:AK121488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1710010/11farnesylated protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17050Os.9584.1.S1_at11/114+9316706..9325115expressed protein
LOC_Os04g17064Os.9692.1.S1_at11/114+9327512..9334651C9orf114 protein, putative, expressed
LOC_Os04g17080NANA4+9336702..9337472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17090OsAffx.13843.1.S1_at11/114+9341395..9341763hypothetical protein
LOC_Os04g17100Os.10097.1.S1_at10/114+9343205..9344407farnesylated protein 1, putative, expressed
LOC_Os04g17120OsAffx.13844.1.S1_at11/114+9352386..9355469hypothetical protein
LOC_Os04g17130OsAffx.3809.1.S1_at10/114+9357468..9367968Formin Homology 2 Domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10097.1.S1_at--1022--8531Chr04:9343693..9343717 (25 bp)
TGGAGCCATGGCCATACGTGCCGTA
LOC_Os04g17100
Os.10097.1.S1_at--705--1891Chr04:9343609..9343633 (25 bp)
ACGTGCGCAACGTGGTGTCCGACCC
LOC_Os04g17100
Os.10097.1.S1_at--73--9111Chr04:9343505..9343529 (25 bp)
TGCTCCGTCATGTAGCTAGCTGTGT
LOC_Os04g17100
Os.10097.1.S1_at--381--8751Chr04:9343495..9343519 (25 bp)
TGTAGCTAGCTGTGTGTCCCCGGGA
LOC_Os04g17100
Os.10097.1.S1_at--612--4111Chr04:9343464..9343488 (25 bp)
CGAAGCAGCCTAGCAGGGTGTTTTT
LOC_Os04g17100
Os.10097.1.S1_at--863--10791Chr04:9343441..9343465 (25 bp)
TTGTTGCCCCTTGCAGCTGTAATAA
LOC_Os04g17100
Os.10097.1.S1_at--1121--10191Chr04:9343416..9343440 (25 bp)
TATTCTGTGTGTCCAGATTCGCCAT
LOC_Os04g17100
Os.10097.1.S1_at--847--6571Chr04:9343401..9343425 (25 bp)
GATTCGCCATCCCTCAAAAATCTTT
LOC_Os04g17100
Os.10097.1.S1_at--299--1191Chr04:9343354..9343378 (25 bp)
AGTAGTAATTTTTCCAGCTGTAGTA
LOC_Os04g17100
Os.10097.1.S1_at--653--6631Chr04:9343306..9343330 (25 bp)
GTTGTGTTACTATTGGACTCTCTTT
LOC_Os04g17100
Os.10097.1.S1_at--173--6671Chr04:9343204..9343228 (25 bp)
GTTGCAGATCGGTTGTTTGAGCTTA
NONE
Target Sequence 
TGGAGCCATGGCCATACGTGCCGTACGACACGGTGGCGCACCCCTACGCACCGGGCGCCTACGACAAGAAGGCCCCCGCG
GGGTACGTGCGCAACGTGGTGTCCGACCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGTCCGCTACACCGC
TGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCT
AGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCAT
AGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTAT
TGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAA
ATCTGCAAAGTTGCAGATCGGTTGTTTGAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis