Browse Element(s) Details


Os.9692.1.S1_at

Description gb:AK065922.1
DB_XREF= gi:32975940
TID=Os.9692.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047P15, full insert sequence.
FL= gb:AK065922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1706411/11C9orf114 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17020OsAffx.19542.3.S1_x_at7/114+9299662..9305134retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17020OsAffx.21754.1.S1_x_at1/114+9299662..9305134retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17030NANA4+9307731..9308663hypothetical protein
LOC_Os04g17040NANA4+9311927..9312495hypothetical protein
LOC_Os04g17050Os.9584.1.S1_at11/114+9316706..9325115expressed protein
LOC_Os04g17064Os.9692.1.S1_at11/114+9327512..9334651C9orf114 protein, putative, expressed
LOC_Os04g17080NANA4+9336702..9337472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17090OsAffx.13843.1.S1_at11/114+9341395..9341763hypothetical protein
LOC_Os04g17100Os.10097.1.S1_at10/114+9343205..9344407farnesylated protein 1, putative, expressed
LOC_Os04g17120OsAffx.13844.1.S1_at11/114+9352386..9355469hypothetical protein
LOC_Os04g17130OsAffx.3809.1.S1_at10/114+9357468..9367968Formin Homology 2 Domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9692.1.S1_at--246--1731Chr04:9334030..9334054 (25 bp)
ACCTATTTGAATACATGTCCCAGTC
LOC_Os04g17064
Os.9692.1.S1_at--917--2571Chr04:9334074..9334178 (25 bp)
AACGGAGGAAGCACTTCTCATCTCT
LOC_Os04g17064
Os.9692.1.S1_at--284--2771Chr04:9334192..9334216 (25 bp)
AAGACCCCATTAGGCGAGCTGGATA
LOC_Os04g17064
Os.9692.1.S1_at--71--7331Chr04:9334268..9334292 (25 bp)
GTGCTAGTGTGGTTCAATTCCCTCG
LOC_Os04g17064
Os.9692.1.S1_at--916--9311Chr04:9334286..9334310 (25 bp)
TCCCTCGGTGGAATATGCTCATGGT
LOC_Os04g17064
Os.9692.1.S1_at--203--4831Chr04:9334302..9334326 (25 bp)
GCTCATGGTCATTATGTTCCAGTGA
LOC_Os04g17064
Os.9692.1.S1_at--531--6411Chr04:9334347..9334371 (25 bp)
GATCTCAACACTTATTTTCGAACAC
LOC_Os04g17064
Os.9692.1.S1_at--231--5871Chr04:9334394..9334418 (25 bp)
GAGCTTTAGGCGGTCGTTTACCCAT
LOC_Os04g17064
Os.9692.1.S1_at--1005--10271Chr04:9334437..9334461 (25 bp)
TTTGCTGGGCAAACCTTGGGCAGGT
LOC_Os04g17064
Os.9692.1.S1_at--952--6931Chr04:9334460..9334484 (25 bp)
GTAGATTGTTTCGTGCCTAAGAGCA
LOC_Os04g17064
Os.9692.1.S1_at--947--8771Chr04:9334536..9334560 (25 bp)
TGTTTTCTGACCATCCAATTGCATC
LOC_Os04g17064
Target Sequence 
ACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGAACAATAAGAACGGAGGAAGCACTTCTCATCTCTCTCCAATACTT
CCAAGACCCCATTAGGCGAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGT
GCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGAT
CTCAACACTTATTTTCGAACACCTGTGTTTATTTCACTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTATTG
AAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAAGAGCAGCTATGGACAGTTGTTAAACGCTTA
TTGGGTAGCCATGTTTTAGTGAAGATTGTTTTCTGACCATCCAATTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis